Gene detail

Detailed information of Bpl_scaf_50887-10.32 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_50887-10.32	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	Bpl_scaf_50887	940592	959033	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_50887-10.32

TTGTATTTTTGTTGTTGTTATTATAGGATGGCAGATTGGAGTGTATTAAGAGGAAGTGACAGAGAATTCTTGTCATTCTACGGAACATCATTTCAACAAATGATGGGTGATCAAGGAATAACAGAGACATTCTGTACTTCTGATAATGTAGACCAGAGCATTGCCTATATAAACCAGGAATTAACCGTTCTTGGCTTCCAAGCAATAAGTTTTGAGACACACAATAGAATACCAAGCTTAGTCAACAGATTGTATGAGATCTTACGTCAGTATCAAAGGATAGGTCGTATACGAGAAGAACTTGAAAATAGATTGCATCGTGTAACCAGTGAGTTAGACCATTATCAAGCCATGAACCAACGATTTAAAACAGAGAATGAAAAACTTGATAAAGAAAATGGAAGAGAACAAGAGAAATATAGACAGTTAATTAACAAACAAAAGGCTTTGTCTTCTAAATTTAAAACAGAAAGAGAAGAGATTAAAAGATTACAGAGTATCATCAAAGATAGAGATGCACAGTTTAAACATGAATTAAAGAAAAAAGAACGAGAAGTGAATAAATTAAAAGAGAAACTACATCAGCTGATATCAGACAAAACACCAAACAGAAGAGTTGGTCAACAAGAAGAGATGTACCAGGTAGTAATACATAACTATGAAGACAAACAGAGAGAGTTAATGTTAGAAAATGCTGATCTCAGAGACTGTTTAACTAATATAGATGACTCCTTCAGTGATGATGATGATAGTAGCTCTATATATTCAGTTAAAAAACCACCATCTCTCCATGATTTTTCTGATGGATATTTCCAAATGCCATATGATGTAATGAAGGATAACCTACATAAGTCATTTAAAGAAACTTGTAGGAAGATTAAACATAACATGAAACCTAAACGACAATTACCTAGTGATTATGATAAACTACAGAAACAGATCAATAAATACAAAGATATAATAAAACAACAAGAAGAACTGATACAGCAATCTATAAACTCACAGTCCAAATCTATGGAGAATTCCTTCCTACATGAATCACATCTACTTCAAGAAAGAGAAACCTTGTCTGAACAGAAACAATGTTTCTTCCAAGAGAAAGCTAATTTTGAAAAGGAGAGAAAAATATTTACAGAGGCAGCTATCAAACTAGGAAGAGAAATAATTAAGTGGTCGTTTGCAGGCACAGCTCCCTCAAGTAAACCAAAGACACCATCAACTGTTGAATTGTATAAAATATTAGGATTGACACCAAAAGATCTTTCAAGAAGAGAAAACAGTACCCCTATAGAGCCTCAGGATGTAGACAAGATATCCAGTTCTGAATCAATACTTACTGAATCATGTAGATCTGCTCCATGTGATCTGAGGGAGAATTCAGTTACTGATATTAATATAGCCAGACGGACATTGTTTCGAAGGTCTAGCACAGGAAGTAACGAAGAATTAGAACTACCGGTATAGCAGTCATACTTGCTCTCAGCAAGGGTAAAATATACCACAAGATCTCATTATTAACTGCCTCATATATAAAGCTTGTATTTATGATGAATTATTCCATGTGGGATATGATAAATAGCACTATTCTGTTGTGTATGTATATGTGTACATGTGTTATTGAGACATGTGTAGTGATGAGAGACTATGTAAGAATACTGGTACATGACAATGTTTAAATGTTTGAAATATTTTTGTTTTGCATGAAAAATTGTATGTTTATGTGTTGACCTTTTAACTGGCGATTTTATTTGGCTCGGTGCCTTTTTTTTTGTTTTTTTTGCTGAAATGTTTATGCAATGACAACAACCTTTTTTGCCAATTTTTGCTGACCAAGTTAAACAAGGGTAATAACAAAATTACCGAACACAGAGCAATCTTCCAAGGAGAAATTCAAAACTCATAAATCAATAAACAGACAAAATCAGTCAACAACCGGGAAATTGGAAAACCGCAATGGTCCTGACTTGGTACAGGCATTTCTAAAGAAATGGTGGATTGAATCAGATTTTACGGCACCAACCTCTCGCTTCCATTACGGTTCAAAGGTTCCCGTTGTCACTAAAACAAGTTTCAGAATAATAATTTGTTTTGCTGATGAGAATTGTCATGAAATGTGTAAAAATATTATGTTTTTTATTTATTTTTTTTTTCAAACTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11559	ADIP	Afadin- and alpha -actinin-Binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021622	Family	Afadin/alpha-actinin-binding	Interproscan
IPR052300	Family	Adhesion and Centrosome-associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46507	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0034451	Cellular Component	centriolar satellite	Interproscan
GO:0035735	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06085	SSX2IP, ADIP; synovial sarcoma, X breakpoint 2 interacting protein	-	Adherens junction	ko04520	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_50887-10.32 global RNA-seq network