| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_50887-10.30 | RADICAL SAM PROTEINS | Bpl_scaf_50887 | 1051168 | 1067831 | + |
| CDS | |||||
| Bpl_scaf_50887-10.30 | |||||
| Transcript |
| Bpl_scaf_50887-10.30 |
| Protein |
| Bpl_scaf_50887-10.30 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00919 | UPF0004 | Uncharacterized protein family UPF0004 | Family | Interproscan |
| PF01938 | TRAM | TRAM domain | Domain | Interproscan |
| PF04055 | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002792 | Domain | TRAM domain | Interproscan |
| IPR006466 | Family | MiaB-like tRNA modifying enzyme, archaea/eukaryota | Interproscan |
| IPR006638 | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| IPR007197 | Domain | Radical SAM | Interproscan |
| IPR013848 | Domain | Methylthiotransferase, N-terminal | Interproscan |
| IPR023404 | Homologous_superfamily | Radical SAM, alpha/beta horseshoe | Interproscan |
| IPR038135 | Homologous_superfamily | Methylthiotransferase, N-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11918 | RADICAL SAM PROTEINS | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0005783 | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0035596 | Molecular Function | methylthiotransferase activity | Interproscan |
| GO:0035598 | Molecular Function | N6-threonylcarbomyladenosine methylthiotransferase activity | Interproscan |
| GO:0035600 | Biological Process | tRNA methylthiolation | Interproscan |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K15865 | CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 | EC:2.8.4.5 | Transfer RNA biogenesis | ko03016 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_50887-10.30 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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