Gene detail

Detailed information of Bpl_scaf_50862-2.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_50862-2.14	THROMBOSPONDIN	Bpl_scaf_50862	154621	183914	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_50862-2.14

CTATGTGACAATGGTTATGCTACACCATGTCCAGACACTCAGTATGGAGAATGTAATGATACGTATTGTCCTACAACCTGCACTCCATGTGAAACAGGATACGCTTGTAGAGGTGGTCAGAGATATATTTGTGAACCAGGAACATTCTCAGATGGAAGCTTGGAATTCTGTAGTCTGTGTACTGAAGGAACATATCAAGATTTAGAAGGACAGGACCAGTGTAAGCCTTGCCCGTCGGGCTACTACAGTTCAACGTCAAAGGACCGATGCCAACCCTGTGAAGCGGGAACGTATTCATGTGCTCTGTATGACCCTTGCTGGAATAACTCCGCCTGTCTTAACACGGCACCAGGTTATCAGTGTCTAGCCTGTCCACATGGATTTTATAGTGGAACTTATGAAGACGGATTGTCCATAAATAACACAGTCCGTGTGTTTGAATTACGAAACGAAGTGTTATCCCCGATCCAAGATCAGACATGCGTTGATATTAACGAATGTCTAACAAACAATGGCGGATGTGACCCAAATGCCCCTTGTGTCAATACAATTTGTCCTGTTGGATATACTGGTAACGGACGACACTGTGGACTTGATACCGACCTGGATGGCCATCCTGATATATCATTATCATGTTCAGACTGGGGCTGTAGACGGGATAATTGTCGTACCATACCTAACAGTGGACAGGAAGATGTTGACAATGACAACACAGGGGATGATTGTGATGATGATAAAGACAACGACGGAAAAATAGATAGTCTGGATAACTGCCCGTACTTCTACAGTTTTAGTCAGAGCGACACTGACAATGATGGAGTTGGTGATCCATGTGATAATTGTGTATCTGTTACCAATAGTGACCAGTTAGATACTGATAAAGATGGGCAGGGTGACCTTGATGTAAATGACAACTGTCAATTTATTCCCAATTCGGGACAAGAGAATGCTGATGGTGATAATTTTGGTGACGCCTGTGACAACTGTCGTACTATTTCTAACGATAACCAAACGGATACAGACCAGAATGGTGTAGGTGATATCTGTAATCCAGTTGGAGGTTTAAATCAAGATAGTTACGATCTACTAGACTGGTTCCTTGCCTGTAATAGGAGATGCCATCAAATATTGAATCATACTTCACATCAGGCATATAATCTGAGCAGTGTCCTTGGATGTGATGCTTGTGACCCGGATAGAGATGGTGATGGGACAGCCAATTCTGTAGATAATTGTCCTTACTTATCAAATACTTTACAGACAGATATCAATGTGGGAGACGACTGTGTATTAGATTCTGATGGAGACGGTGTTTATGATAATAATGACACATGCCCACATAATCCGGGTATATCTTCCACATCATTTCTGGACTATTTTATCGTGGATTTATATCCAGGCTATGGCACCACAAAGGCAGATTGGTTTCAGTTATATGATCTTACGTCAATGTTGACAGACAGTGGCGACATCTATGATACCAGTATAACAGGTGGAAGAGTTGGTGTGTACCAGTTTGGTCAACGGATGGGGCTCTGGTCTGATATAAAGAGCACATATGACTCCATCTCTGACGTATTATTGTACCTAGGAAGAGACGACAGCAATTTCTTCAAAGGCTATATGGATGAGATAAGATTTTACACCGTTGCTGTTATAGATGACGAGATTACTGAACATATAAATTTGGCATCTATTGGCAATTATCCAAAATATCATAAGTATGGTCAATTACACTTTAAAATGAACCAAGCTACGGGATCACAGTACCTGGAGAATGAGGGATTATTCACTTTGTCTGCACAAATATACGGCCATCCTACATTTGTAGAGAGTCATCAAGACTTTTCTCGATTTCGTCTCAGTTATCCTACAAACTGATGCAGCTCAGTCTGATATTTTTCAAAAGTATACAATATACTAGATTCAATTTTGTGTCACAAATTTCAAACATTTACTGTACATCTCTGTGCATGCACACAATGACTGCATATTGCTTTTGACTTTGTCCTTTGGATCAATATTTTGCATCATATAGAAATTGAACAAACATCTGTGATTGGTTGGTTGGTTTATGATGTTTAATGCCACTTTCAACAAAATTTCAGTCATATCGTAGCAGTCAGATTTATCAGTGGATGAAACCAGAGAAACCCACCGACCTGTCGCAGGTCACTGACAAACTTTATCACATAATGTTGTATCAAGTACACCTCGCTATTAGCCAATTTTAAACTAAGAGTTTGAATATGGCTCATGGTGAGGTGTACTCGATTCAACATTATGTGATAAGTTTGTCTGTGGTTTTCTTCGGGTACTCCTGTTTCTTCCACCAATGAAACTGATTGCCACGATAAAAGAGAAATATTGTTGAAAGTGATGTTAAACACCATAGCCTTAACCCTAACCCTTTGTCAAATTAAAATAAAAAAAAAAAAACATTTTAGAAATTCAAATTCTCGTAATTAAGTTATCTGCTTCTTTCAGTTAATTTTTGCTTAAAAACACAAAATGAACGATTCAATCATTTTTTTCTACTCAAAAACTCCTTAGGTATACTATGTATCTGTAGGTTTGTGATAATGTTGCAATAACTGTGATAATTATATTTATTTTGATGTTTTGTTATATATTTCTTAATCAATCTAATTAAAATTAAATCTCCATTCTTGCTCCCTATTTTTCTTTTGGTTGTTTGCTAGTCACTGTGTGGGAGATCTAAAAACTGTCCTTTACAGGTCGTGTCAGGGGTCAACATGAATACATTCAGTGTCTATTGGGTACATTCCAAAATGCATATGCTTGTCTTGTCTGCTGGATTTTGTAGCAGAGTTGTTGATTGGTCAATTTATGATATATTCATGTCGACCCCTGCGGTGACCCCTAAACTAGTAAACAACAGATAGAAATTACTAGCGAGCAAGTGCAGAGATATGATTTTAATTGGATTGTTTGTTAATGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02412	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF05735	TSP_C	Thrombospondin C-terminal region	Family	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003367	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR008859	Domain	Thrombospondin, C-terminal	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR028974	Homologous_superfamily	TSP type-3 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199	THROMBOSPONDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_50862-2.14 global RNA-seq network