Detailed information of Bpl_scaf_50780-1.21 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_50780-1.21RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDBpl_scaf_5078067790100905+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01858RB_ARetinoblastoma-associated protein A domainDomainInterproscan
PF11934DUF3452Domain of unknown function (DUF3452)FamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002720DomainRetinoblastoma-associated protein, A-boxInterproscan
IPR024599DomainRetinoblastoma-associated protein, N-terminalInterproscan
IPR028309FamilyRetinoblastoma protein familyInterproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13742RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0031175Biological Processneuron projection developmentInterproscan
GO:0035189Cellular ComponentRb-E2F complexInterproscan
GO:0048667Biological Processcell morphogenesis involved in neuron differentiationInterproscan
GO:0051726Biological Processregulation of cell cycleInterproscan
GO:2000134Biological Processnegative regulation of G1/S transition of mitotic cell cycleInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06618RB1; retinoblastoma-associated protein-Cell cycle ko04110PMID: 28812709
Cellular senescence ko04218PMID: 28812709
Pathways in cancer ko05200PMID: 28812709
Viral carcinogenesis ko05203PMID: 28812709
Pancreatic cancer ko05212PMID: 28812709
Glioma ko05214PMID: 28812709
Chronic myeloid leukemia ko05220PMID: 28812709
Melanoma ko05218PMID: 28812709
Bladder cancer ko05219PMID: 28812709
Prostate cancer ko05215PMID: 28812709
Breast cancer ko05224PMID: 28812709
Small cell lung cancer ko05222PMID: 28812709
Non-small cell lung cancer ko05223PMID: 28812709
HTLV-I infection ko05166PMID: 28812709
Hepatitis B ko05161PMID: 28812709
Kaposi's sarcoma-associated herpesvirus infection ko05167PMID: 28812709
Epstein-Barr virus infection ko05169PMID: 28812709
Human papillomavirus infection ko05165PMID: 28812709
Endocrine resistance ko01522PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_50780-1.21 global RNA-seq network
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