Gene detail

Detailed information of Bpl_scaf_50294-0.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_50294-0.10	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Bpl_scaf_50294	60224	85254	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_50294-0.10

ATGGCTGAAATAGAAATGGAATCGACTACATTGACGGAGAATAACAATGACAATTCTCAAAAGAAAGATGAAACTCCGCCTTCACCTGTCGTATCTGATATGCAGGAAGTAAACAAAAAATCTCAAGATGAATCGGAAGTAGAATACAATAATATACAATGCAATACAGATATATCTCATCAATATAACGAGAGTACTGTAGATCCCGAATCAAAGACTCCCCTTAAACGGTCTGTTACTTTCCCAGGGGAGTGTTTAGTTGCAGGATATCTTGAACCACCTGACCCCTGGAAAAATGTACAGCAATGGACATCTGATGACTTGATAAATTCATACAAGGTCAGCTGTAAAAAACATAATACCAAGCCCATAAACAGTATACTTAATCAGCTGCAGGGAATTGAAAATGTTGGTGAACGCTATGCAATTTTAAGTTTAAAAGGAGAAAAGCTTGACATGAAAAATGTAGAAACTTTAGAAGAAATATTAAAATTTGTACAGTTTCAGTGTGTAGATTTGGAGGCAACTCATTTAGATGAGGAGACATCAGTAGCCATATTTGAAATGATAGAATACTATGAAAGTGCATGTAAAGTTAATATATCATTCAACAAAAATATATCAATAAGAGGTTGGCAGTCCTGTGCTAGAATGATCAGGAAGACTCCATGTTTAACATTTCTTGATGCCCGAAGCTGTGATATCAATGAAAGATTATTACCTTTTCTGGGGAGAGCTCTCAAGATGGGATGCTTCTTGAAAATACTCCATTTAGAAAATACATACTTGTCTGGAAGAGCTCTTGTAATTCTTGTCGCTGCTTTGAAGATGAACGAAATATTAAAGGAGTTATTCCTAGCTGATAATAGACTTATGCCAACAGATGGAATGCAGCTTGGAAATTTGCTAAGATATAACCATGTGTTAGAACTTCTAGATCTCAGAAATAACCAATTACAGGATATAGGAGTTGGTCATGTATCTGATGGATTATATGAACAAAATTTAGACCAAGGATTGAATACCCTTGTTTTGTGGAATAATCAGATGTCATACCAAGCCATGTCTGCCATTTCTAAAGCTCTTACATCAACAACGAGATTAGAAACTATAAACTTGGGTCACAACAATATCACAAATGAAGGTATACACCTTCTGAAAGAGGGACTTCTACAAAATAAATCACTGTTAAGGATAGGACTTCAGGGAACCAAGATAACTTGTGAAGGATCAGTGGCTTTAGCAGAAGTTATAGCAGATAGTCCAAAACTTGTGAGAGTTGATCTTCGTGAAAATGAGATAAAAACAGCTGGAATGATGGCTCTGTCACTTGCACTGAAAGTCAATGATATCTTACAACGACTGGATTTAGATAAAGAAACAAAGAAAGAAACGGGAATAAAAGATTATGCTGATCAGCAGAAAAGATTACAACAGGATATTAATAAAAAGTTAGAGGAAAATCGGGAAGTGTTTTATAAATTAGAACAAGAAAAGTCTATAAAAGAAAAAGAAATAGAAAAAGACAAAGACAAGGAGTCGTCTGAAAATGATTCGTCATACATTGAATCATTTGACAAAGTTAAAAGACCTATGTTACTTGTTATGCCAGACTGTCCACCCGAGATGTCGTTAGATTCGCCACATTGTACAGAAGAGTCTGTTGATTACATTCCATTTCCAGCTTCAAACTCTATAATTACCACTCCCCCAGGGGATTTATTATTAAGTCCGCAGTATTGTCCATCAGTAAAAGCTCGTAAAATTTTCACAGTATCACAAGTAAAAAATTCCTCGCTTTCATCTCCAGTAAAAAATTCCCCACTTTCACCTCCAGCTATTTCTGTTTCATTACTGCTACCATCGGTGGATATACCCACGGCATTACCAAATTCTTTACCTGTGGTACCATTACAACCAGTGATAGTCGCTTCCTCTAATGACATTGCAAATGAATGTGACCCAGATGTAGAAAAAATTAAAAGAGGCGATCTCAATATGGCTTCTCTTCCTAAAATGGAACCTGTGACGGTGTCAGATTTAAGTAATGCTCTTGTTGATGAAAGTGTTAACCATATATTAAACCAAATTATCTGTAATGAACCTAACTATGTCAAGGATACAGTTATAACAAATAAGAGAGAGACTGTTAGCCTTGTTAATGATAATAAGGAAGTGACTATTGACACAAATATAAGCCATGTAAATGTTGTGATTACTGACATTGATGCAAACTGTGATGAGAAAACTCTACAAAATGTGCAATCAAACATTGATCCGTGTTCTACAATAAACAATTCTGATGCTGAACTGAAGAAAAACAATAACATTAGTAACCATTCTGAAAGGTCAAAGTTGACGAACGGCTGTGATGTATTGACAAGTAAGAACGTTATAGAACAGACAGGTGTCCGAGACTTAGACTTTGGCGTAGGTAGTTATGATTGTGAACAATGGACAAATGTTGAAGATTCTGTCAAGCCAAACTTTCAAACTTCATTTACATTAAATGGACTAACAAAAGAATTAGAGAGTGCTATAGAGGGATTAGATGTCTCTCCAGATGTAATGCAATCAACAGAAAGTTTGAGTACCCCAGATGACTTTGAAAGAGAACTTGATGCAATGATAGCAAATGTCAAAGGTGGATCAAATCTACTTCTTGGTGTAACAAAGACAGATTCAGAAGTTTAA

Transcript

Bpl_scaf_50294-0.10

TTTGCGTGTAATGAAAATGGAGACTGTTTTCATAATATTTAATAATTCATTTCATGATTAAGTTTAGAATATGGAGAGAATAACATGACTTAAATTTATGAGATGGCTGAAATAGAAATGGAATCGACTACATTGACGGAGAATAACAATGACAATTCTCAAAAGAAAGATGAAACTCCGCCTTCACCTGTCGTATCTGATATGCAGGAAGTAAACAAAAAATCTCAAGATGAATCGGAAGTAGAATACAATAATATACAATGCAATACAGATATATCTCATCAATATAACGAGAGTACTGTAGATCCCGAATCAAAGACTCCCCTTAAACGGTCTGTTACTTTCCCAGGGGAGTGTTTAGTTGCAGGATATCTTGAACCACCTGACCCCTGGAAAAATGTACAGCAATGGACATCTGATGACTTGATAAATTCATACAAGGTCAGCTGTAAAAAACATAATACCAAGCCCATAAACAGTATACTTAATCAGCTGCAGGGAATTGAAAATGTTGGTGAACGCTATGCAATTTTAAGTTTAAAAGGAGAAAAGCTTGACATGAAAAATGTAGAAACTTTAGAAGAAATATTAAAATTTGTACAGTTTCAGTGTGTAGATTTGGAGGCAACTCATTTAGATGAGGAGACATCAGTAGCCATATTTGAAATGATAGAATACTATGAAAGTGCATGTAAAGTTAATATATCATTCAACAAAAATATATCAATAAGAGGTTGGCAGTCCTGTGCTAGAATGATCAGGAAGACTCCATGTTTAACATTTCTTGATGCCCGAAGCTGTGATATCAATGAAAGATTATTACCTTTTCTGGGGAGAGCTCTCAAGATGGGATGCTTCTTGAAAATACTCCATTTAGAAAATACATACTTGTCTGGAAGAGCTCTTGTAATTCTTGTCGCTGCTTTGAAGATGAACGAAATATTAAAGGAGTTATTCCTAGCTGATAATAGACTTATGCCAACAGATGGAATGCAGCTTGGAAATTTGCTAAGATATAACCATGTGTTAGAACTTCTAGATCTCAGAAATAACCAATTACAGGATATAGGAGTTGGTCATGTATCTGATGGATTATATGAACAAAATTTAGACCAAGGATTGAATACCCTTGTTTTGTGGAATAATCAGATGTCATACCAAGCCATGTCTGCCATTTCTAAAGCTCTTACATCAACAACGAGATTAGAAACTATAAACTTGGGTCACAACAATATCACAAATGAAGGTATACACCTTCTGAAAGAGGGACTTCTACAAAATAAATCACTGTTAAGGATAGGACTTCAGGGAACCAAGATAACTTGTGAAGGATCAGTGGCTTTAGCAGAAGTTATAGCAGATAGTCCAAAACTTGTGAGAGTTGATCTTCGTGAAAATGAGATAAAAACAGCTGGAATGATGGCTCTGTCACTTGCACTGAAAGTCAATGATATCTTACAACGACTGGATTTAGATAAAGAAACAAAGAAAGAAACGGGAATAAAAGATTATGCTGATCAGCAGAAAAGATTACAACAGGATATTAATAAAAAGTTAGAGGAAAATCGGGAAGTGTTTTATAAATTAGAACAAGAAAAGTCTATAAAAGAAAAAGAAATAGAAAAAGACAAAGACAAGGAGTCGTCTGAAAATGATTCGTCATACATTGAATCATTTGACAAAGTTAAAAGACCTATGTTACTTGTTATGCCAGACTGTCCACCCGAGATGTCGTTAGATTCGCCACATTGTACAGAAGAGTCTGTTGATTACATTCCATTTCCAGCTTCAAACTCTATAATTACCACTCCCCCAGGGGATTTATTATTAAGTCCGCAGTATTGTCCATCAGTAAAAGCTCGTAAAATTTTCACAGTATCACAAGTAAAAAATTCCTCGCTTTCATCTCCAGTAAAAAATTCCCCACTTTCACCTCCAGCTATTTCTGTTTCATTACTGCTACCATCGGTGGATATACCCACGGCATTACCAAATTCTTTACCTGTGGTACCATTACAACCAGTGATAGTCGCTTCCTCTAATGACATTGCAAATGAATGTGACCCAGATGTAGAAAAAATTAAAAGAGGCGATCTCAATATGGCTTCTCTTCCTAAAATGGAACCTGTGACGGTGTCAGATTTAAGTAATGCTCTTGTTGATGAAAGTGTTAACCATATATTAAACCAAATTATCTGTAATGAACCTAACTATGTCAAGGATACAGTTATAACAAATAAGAGAGAGACTGTTAGCCTTGTTAATGATAATAAGGAAGTGACTATTGACACAAATATAAGCCATGTAAATGTTGTGATTACTGACATTGATGCAAACTGTGATGAGAAAACTCTACAAAATGTGCAATCAAACATTGATCCGTGTTCTACAATAAACAATTCTGATGCTGAACTGAAGAAAAACAATAACATTAGTAACCATTCTGAAAGGTCAAAGTTGACGAACGGCTGTGATGTATTGACAAGTAAGAACGTTATAGAACAGACAGGTGTCCGAGACTTAGACTTTGGCGTAGGTAGTTATGATTGTGAACAATGGACAAATGTTGAAGATTCTGTCAAGCCAAACTTTCAAACTTCATTTACATTAAATGGACTAACAAAAGAATTAGAGAGTGCTATAGAGGGATTAGATGTCTCTCCAGATGTAATGCAATCAACAGAAAGTTTGAGTACCCCAGATGACTTTGAAAGAGAACTTGATGCAATGATAGCAAATGTCAAAGGTGGATCAAATCTACTTCTTGGTGTAACAAAGACAGATTCAGAAGTTTAAGAAGACTACTCTATCCAATTAATTCTAAGACGGTTGTACTAAAGATACAGAAACTGACACAAAAGTGTGGTTGACATTTCTGTGTTTAATGCCAAATTAATGAGAAATATTAGCTCACTTCTTACACTTTCTTAAGGTGGTACCTAACACTACAGGGAGATAACTTTTTAAAATCAGTTGAACGTTTTGATCATATGATGTTTGTAAGCAGATTTCAAGCATCTCGATGATCAAAACCACAGAGAGAAAAGCTGCTATGTGGCTAGTGAATTTATAGCTCTGAGTCTGTTGGTTGGAATTTGTTAAAATTTTGATATTTATTACAGTGGATATATTCAAACACACTGCCAAAAAAAATAAGAAAATTAAACGAGCAGATCAAATTTTACCTGAAATGTAAGGTACCACCTTAAATTATCTATTATAAGTGTTCCATTTTTTCTTAAAAGGTGGTTTGTACATTTTTAAAAGCAATTTTAGTGCTTATTTCAGAAAATAAATGTTTCATGTAAATCCATTTAGTTTTGTTTGTGATTTCTATTTAAGTATGTAGCTCCAGCTCTGTTCTATATGAGAAAATTGTCATCATTCGTGAAATTTGTATAATGTTTCTCAAAGATAAATAAAAGTGATATATACTTTTGAGTACTGCAGAATTCTTCTGATTTTGACAGTAGCTTTTTTAAACTGTTACATGTATTTGTCTCGGTTTGTGTCGGTAAATATTTACTAATAAATGTTAGAATTTAGTATTTGAAGCTATATATCACAACCTTGGATCAATCATAATTACCGGTAAAAATATGTCCTGAATTTATGCAATTTATGGCCAAAAATATTTTTGTATCTAATCAGTGGTTGTACATTTTTGCCATTAATAAACTTTTTTTTTCTGGTAATTGCCTGTCTGTGATTTATTTTGGACATTGTATATTGGCATCAGTACATAATTTGAGAGGAGAGGATATTTGTAACAACTTGTTTCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051279	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030027	Cellular Component	lamellipodium	Interproscan
GO:0034315	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17576	PPP1R37, LRRC68; protein phosphatase 1 regulatory subunit 37	-	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_50294-0.10 global RNA-seq network