Gene detail

Detailed information of Bpl_scaf_49876-0.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49876-0.7	N-LINKED OLIGOSACCHARIDE PROCESSING	Bpl_scaf_49876	44135	92301	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49876-0.7

Transcript

Bpl_scaf_49876-0.7

ATGGGTAGTAATCCGTGCTCCACTCAAATTGTTGTGCTCCTGATGGGTAGTAATCCGTGCTCCACTCAAGTTGTGCTCCTGATGGGTAGTAATCCGTGCTCCACTCAAGTTGTGCTCCTGATGGGTAGTAATCCGTGCTCCACTCAAATTGCTGTGCTTCTGATGGGTAGTAATCTGTGCTCCACTCAAGTTGTGCTCCTGATGGGTAGTAATCCGTGCTCCACTCAAGTTGTTGTGCTTCTGATGGGTAAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTGTAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATATTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCAGTGACATCGATCTTCTAGAAGCTATAGCAGAAGCCATGGCTTCAATATACCAACCAACTGAAGATGGAACTTTTACCTGTTTAGATGGATCATCAAAGATACCTTATGAATATGTAAATGATGATTATTGTGATTGTAATGATGGAACAGATGAACCAGGTACCTCAGCTTGTCCTAACGGGAAGTTCCATTGTACTAATGCTGGATACACCCCATCAAATATTTTATCATCAAGAGTGAACGATGGTGTATGTGATTGTTGTGATGGTACAGATGAATATGCAGGGAGAATTGAATGTGTAAATAACTGCAAAGAATTAGGAAAGAAGCTGAGAGAAGAACAAGATAAACAAAGACAATTACAACAAGAAGGCTATGAGAAACAAAAACAATTTGCTGAAGAAGGGAAGCGAATGTATGAAGAGAAATTGAGTAGGCAAGAAGAACTTGAAAAAGAAAAAGAAACCTTAGAAGTCACAGTTAAAGATCTTGAAACTCAAAAGCTTGAGGCTGAAGCACCAGAAACTGAGGCGAAAGACAAACATCAGAAAGCTTGGGATGAATTGAAAGCAGAAAGACAAGCAAAGAGAGATTCTGAAGTTGCTGCAGAAGCTTTTAAAGAACTTGATAGTAACAACGATAATTTTGTTGACTTAATGGAGGTGATTTCACATAATGAATTTGACATTGATTCCAATGGTGTCGTATCTGAAGAAGAAGCTAAAGAACATTTAGAAGACAAAGATCAGGTTGACATAGATACATTTGTATCCTCTATTTGGCCTCATGTAAAAGACATTTACAAGAAGCCCACTCCTGATGAGCCTCTACCTAGTGATGATGACACAGCTGAAGAGGCCAGAGGAGAGGAAGCAAAAACTGAGGAGGCTCAGCCTCCTGTCACTGGGGATTCACCATCCGTCCTTGACGATGAGGATGAGGATGGGGACTATGATGATGATGAAGATGATGATGAAGAACCACATCACGATCAAGTAGTTCCTACACCAACAACTCGAATAGCTGGTGAGCCAGAACTGATTTTAGATCCACCAACATCGGAGAAAAATGAAGAAACAATGCCTGAATATGATGAGGAAACAAAGAAATTAATTGAAGCTGCTGATGAAGCAAGAAAAAATTATGATGAATCAAACAGTAAACTCAAAGATATAGAGCAAGAATTATCGTCAATAAAATCTTATTTAGAAATAGATTATGGACCAAATAGAGAATTTGCAGTGTTACAAGACCAATGTTTTGAGTATACAGATAGAGAATACACATACAAATATTGTCCATTTTCTAAAGGGTCGCAGCGACCTAAAAATGGTGGACATGAAACTAGTTTAGGGAATTGGGGCAGATGGGATGGTCCAGAAAATGATAAATATTCAGTACAATTATATGAAAAAGGACAGAATTGTTGGAATGGTCCCGACAGATCAGTTAAAGTTCATTTAAAATGTGGATTAGAACATCAACTTTTAAGTTCAAGTGAACCAAGTAGATGTGAATATGCCTTTGATTTTGAAACTCCGTGTAGATGTTCACTCCCTGGAGGAGGATCAACACATTCACATGATGAACTGTAAATCAACTCCGTCTCACATTAACCATTACTTTTTTTTGTAGCTGATGTTTTTTTTCTTTTGAACAGTTCCTAACTACAACAATTTAGGTTGCTCAGTGTTTAAATTAAGAATGCAATGCCATAATTCTTTTATCCTCTCATCATGGCATTTGATTGTCAAAGGAGTCGAAGCCAGTAGGTATCCTCAAGATTTTACCTTTATTTCAATGGAAAAATTACCTTAATTTTAAAAACTAAAATAAACCGGTCACATATAATTTGAAGAAAATTAAAAAAGAGATTGGATTTTGTGTCAACAAGGACCAGAGATTAATTTAATTACTATATTTAACTTCTATTGATATATATCACATAATTAATTTAGCTTTGAAGTCTATGTAGAATCCTGAGGATAATGCATGGAGTCACCTCCAATCAATTACTTCATATTACAAATGCTAATCAATGATTGGTCAATTACATTATGTGATGTCACTCCAGTTAAGAGAATAAGTAGAATGTATGTTTTTGTGTTTCAATTAAAGATTCTTTGCCATGTATGCAAATATAGTGCTATTGACTTGTTTTATTAATTTAGGGGCATTTATACTTAAAATTATTATTTCAACTGTATGTTGACAATCAAACCATTGTTTTTGTGTGTTGTCATCCATCATAAGTACATTTTATATGACCAATCATTTCAGTGGCTATATGACGAGGTATATATTGCTCAATAGTGTTTCCCAAAGTAAATTGAAGTTGAATGAACATTCGGTCCAGTAAAGGAGTACAAATTACTGGACCTATCATCAAGTTTACAGGACATTCATATACTCCAAAGAGGAGGTTCTCAGATTCCTACTGGTCATTTGGTCCAGTAATGAATAATCTTTCACTGGACCAAACCAATTTTTAGTGGACATTGCCACATGTCCGACTTACCTTGGGAATGACTGCTCAATAAGCATCGTTTTTTTTCCAAATCTTTGGTAAATTTTAAAACATCCAAAAAGATTTACATAGGGAAATATTGTAAATGAAAATCTTGGATTAATAAAAACTGATGGCCGATTAATTTGTAGTGTGCAATTCTATAGTTACTATAGAATAAATAAATTGATTAATTTTAATTTAGGAACATGTAAACAAATATTTTTATGGAGGGATAAAAGAACAAATACCAATGATTTTATTTGTTGATTGCAAATCTCAACCTATTAGGGTGTCATTTAAATTACTTAATTATTTTCGATTTAATCAAACCAACATACTGAAAAGCAGACATTTTTAGCTCACCTGACCCAAAGGGTCATGTGAGCTTTTGTCATCACTTTGCGTCCGTCGTCGTCGTCGTCCGCGTCTGTAAACTTTTCATACTTTCTTCTTCTTCTTTGAAACCACTGAACTGATTTAGACCAAATTTGGCAGAAATGTTCATTGGGAGGTCCTCTACTAAATTTGTTATTTTGGTGCAGATCGGAAATCCAACATGGCCGCCAGGGCCAATAATGTGTTCTGATTGGTTGAAACTTTGAAAATCTTCTTGTCAGAAACTACTCAGCCGATGGAATTGTAACATTATAGAAATGATGACTGGATGGTCCTCTACTAAATTTGTTATTTTTGTGCCGATCGCATATCCAAGCCACCATGACTCTACTTAGTTTTAACATAGAACCCTATGGGAAAAATGTTTAAAAAATGTTTCCTCTGAAAGCAGTAAGTCAATTTAAAGCAAACATGACATGAATAGTCCTTAGGTGGTCAACTTTCAAAATAATGTCATGTGACCCCGACCTCCATCCAAGATGGCCACCATCAGCGAACATAGTTTTAACATAGGACCCTATGGAAAAAATGTTTAAAAATTGTTTCCTCTGAAACCAGTAAGTCAATTTAAAGCAAACATGGCATGAATGGTCCTTAGGTGGTCAACTTTCAAAATAATGTCCTCCATCCAAGATGACCACCATCAGCAAACATAGTTTTAACATAGGACCCTATGGGGAAAATGTTTAATTTTTTTTTCCTCTGAAACCAGTTAACCAATTTAAAGCAAACATGGCATGAATGGTACTTAAATGGTCAACTTTCCAAATTATATCCAGTGACCCAGACCTCCATCCAAGATGGCCACCATCAGCGGACCATTGGACTGTATGGGAATTTCATTGAAAAACCTTTTTGTGAGAAACTACTCAACAAATTGAATATTTTGCATTATATGAATGTTACTTGGATGGTTCTACACCTGATCTATTATTTTGGTGCAGATTGGAAATTCAAGGTGACCTCCATTGACGGATGAAGTTTAACATACCGGTAGGTCCTTTACCAGAATTGTAATTTTGGTGCTGATCAGTAATTAAACATGGCTGCCAGGGGTAGATAATGTTTTCTGATTCGTCAATCTTTAAAAATCTTCTGGTCAGAAACTACTGATTCAATTGAATTTGTTTTCTGGTGTGAATGATCTATGGATGGTCCTCTACCTAAATTGTAAATTTGGTTCTGATTGGAAATTCAAGATGGCCACCATAGACGAACAAAGTTTAACATAGAAGCCTACAAGACCCAATGGGAATTTATACTGAGTTGTTCTTCTCAGAAAGTACCAAGCCAGTTGACTTGATTTGTTCTATGCTGCTCCTATCTGCAAACAGAAAGACTTGAAAAATATGCTTGTTGATAACCTTCTTCAAGAATTAAAACTTAAGCAGTCTAATATACTTACCATGGGAGATTTGAATTTTGACTTTAGGTTTTCAGAATTTATGGAGCACACATTCAATAGTAAGCAAATTGTGTCTTAAGTCGCAAAAAAATATGAATCTTTGTTAGACTTCACGTTCCTAAGGATTTACCCTGCCAATTATTACCAGGTGAGCGATGACAGGCTCTCCAGAGCCTCTAGTTCTTTATTCTAGTCAATTGGTAATCATGAATTATTTGTCTAAGGGTGGAATAGTTACATTATAATAAGCATTTTACTTCAGACCTTTACTGTAAGGCAATTTCTCAACTCTATGCAACATACCACTCTAACATCATTTTAAAGACAGCCATACCTTATATGACTTTATGACTGCCATAGAGGTCAACACATGTCTGTTTTGTGATGACATATACTTAATGTACTGATATGTCAGAGGATTTTAAACAATTAGAACTCCAGAATCTCTGTTCTAGAGTTGTACACCAGTTATTCATTAAACATCATTTTAACATTTTCTATTTTTGAAAAATATATGTTATCAGAAAATGTTCTGAACTGAAATGGTAAATTTAAAATTGTAATGTTTAAGATTAAAATTATTATGGTATAATGCTATAAATTTCCCATTATTTATAAATCAATTCTACTTGAAAAAAGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12999	PRKCSH-like	Glucosidase II beta subunit-like	Family	Interproscan
PF13015	PRKCSH_1	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR009011	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR028146	Domain	Glucosidase II beta subunit, N-terminal	Interproscan
IPR036607	Domain	Glucosidase 2 subunit beta-like	Interproscan
IPR039794	Family	Glucosidase II beta subunit-like	Interproscan
IPR044865	Domain	MRH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12630	N-LINKED OLIGOSACCHARIDE PROCESSING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0006491	Biological Process	N-glycan processing	Interproscan
GO:0017177	Cellular Component	glucosidase II complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08288	PRKCSH; protein kinase C substrate 80K-H	-	Protein processing in endoplasmic reticulum	ko04141	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_49876-0.7 global RNA-seq network