Gene detail

Detailed information of Bpl_scaf_49537-9.23 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49537-9.23	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B	Bpl_scaf_49537	1061138	1077923	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49537-9.23

ATGGCTACTAGACGATCAAGGCTACAAATAAAACCCAATATAGGTGGTAAAACAAGCTCTGGTCCAAAACAAAGACAAAATAATGATGAAAAAAATACTGCAGTTCCAATAAGTGCAGAGTTAGCAGCGGGAGCTGCCACAGCTATCAATGTAAAAAGTGGCCCTGGTTCTCTTACGGAACCACCAAGTTCCTCCAAAGGGTCAACTCAAGGATTAGTGTCTTTGCAATGCAAAAAAGGCAATAATACTGAAGTTATACAAAATAATTCAAAGGATGGACCAAATAAAACTGTAGGGCTTACAAATACAATTGTTAGTGACATTGGTTCTAGTAGCTCCAAAAAAGATGCAGTTACATTTACCAGGTTGAAGAGGTTTGGACTAAATTTAGGGTCGAAAAGTACTGCTATATCAAGAATTGATGTCAAATCGGACAGTCAGAGTCCTCCACATAGGTCTATAAATCAGTCGAGTAGTCCGAAGAAAAATATGACTAGAATTATTAATAGCCCTCCGGGTAGTCCAGTGAAGAGTCATAAAAATAATATGGAAATATTACGATATGACAATGTTTTAAATGAGAATGAACCGTCAAAGAGTAACTCAAAGCACGTGACGAGTGCTGTACCAAATGTACCGGTAAAGCTTAATGTTTCTAGTCACAATTTAAAAATGCCTTCAAATACTCAAAGTAAAGATCCGGGTCAATCTCCGTTAAAATCAAAACTTGTTAGTTTGGAAGATTCTGCTAAAGCCGTACAAGAGGAAAATATGAAAAACACAGATTCTCCTGAACCAGAACCTGAAAAAACAAATACCAAGCTAACAACAAAACCTCCATCAGTGAAAGAGGACGCAGAACTGGCCCCAGAAATCATAGAAGAAAATGAAAACACAGCCACTTATGCTAGTTTTAGAAAACCATTAAGTAGAATTGGTTGGTCTGAGTGGGAAACAGAGAAATTTTACAGAGCTTTGAGCTATTTAGGGACAGACTTTTCTTTAATGATAAAACTCTTCCCTAACCGGACTAGATGTGACATTAAGACAAAATTCAAGAGAGAAGATAAATTAAACAAAAATAAAGTGGACTTGGCACTTAAAAACAAAAAGCCATTTGACATGACTTTCTTTAAGCAAGAGGAAGAGCTGGACAAACTAGAAACAGAGAGAAAGATGAAAGAATTTCAAGAAAAAGTCAAGAGAACGAAGCAGACAAGGGCAGAAAAATCAAAAGAAAAGAAGAAATTAAAAGAAATAGATAAGCAAGATGCACGTTTAACAAGAGAAAATTACAGGTCGTGTCGTGATCGACAGAAGATATCTTATGATGAAGATAGTCTTGACAGTGAAATAACAGACGTAGAACTCACCCCTGACACACCTGTGAAAACACCTATACGCTTTCCATTCAGAAAACAAGATGGCCTTCCTTTTGTTCCACCATATTGCTTACGACGCCATGAAGATAGCGATGAAGACACTTTGGAAACACAAGTCAATATGAGTGATTCTGAAATCTTGTCACCACAGAAAGCCTCCACATCAGAAGTCTCACAAGTAACAGAGAGTCCTATTTCTCTCAATAACACACATTTTCCACCTAATTCTAATGTACAGATTGCACATTTGAACGATGCAAACAATTCACCGCTTGTTCTTGTGTATCATACTCCGGAGGACGGGAAAGGAGAAACGGTTATTCATGTATATCAACTACAAAATCACCAACTTGGCAATGTGAGTCACGTTCAAATTCCATTAAACGATGGATCTAGTATTATTGAGCTTCCTAATCTACCGTCGTCTGCTAGTGAAAGTATGACAGCCAGTACACAAGATCAATTCATCGTTCGGGAACAATCAGAACTACCATTATCAGGGCAGAATACATTGGATCAGGAAAATTTGCCCTTTCTCATTGCAACCGGAAAAGATAACCAACCTCGATTAGTTGTTCCATCGATCGGTGAAAATGTTACAGAAAATCAGTTATCACAGTTACAAACAGGAACAGGAAGTGAAGACTTTATAAACATCATTGATATCAATGCTAGTAAAATATCAACTCCCAAGAAAAACACAAAGGGAGATAATTCATGTAAGGAACATGAACAAATTTCAAAGGGAGACAATTCATTTTATGAAGTTGTTAGGGTAAATTCTGACAATGACCATGACTCTGATAGTTCAAGGACATCTTCCCCATCTCTAGTTATTGACAATGAATGTGTATGGTGTGTCACATGA

Transcript

Bpl_scaf_49537-9.23

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15963	Myb_DNA-bind_7	Myb DNA-binding like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR039467	Domain	Transcription factor TFIIIB component B'', Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22929	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000126	Cellular Component	transcription factor TFIIIB complex	Interproscan
GO:0001156	Molecular Function	TFIIIC-class transcription factor complex binding	Interproscan
GO:0070898	Biological Process	RNA polymerase III preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15198	BDP1, TFC5; transcription factor TFIIIB component B''	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_49537-9.23 global RNA-seq network