Gene detail

Detailed information of Bpl_scaf_49536-0.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49536-0.7	SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED	Bpl_scaf_49536	25906	47709	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49536-0.7

ATGAAAGAAGCATCAAAGTTGGTCAGTCGCTGTGTTTATATCAACATTCTGAAAGCTACCGAGTCGCAGAAAGCATTGGAAAAGTTTATTGAGGATGGTGGTTGGGACATTTTAAATCAATGGTTGACAGATTTCAAAGAAATTGATAATACCCAGCTGCTAACAGAAATAATGAAGTTATATCGGGAACTTCCTGTCACAGTAGATTTATTGAAGAAAAATAGTGCTGCAAAGACGATAAAACAGCTGGGGAAATCAGAAAACGAAGGTTTGAAAACATTATCAACAGAAATTGTAGATAAATGGATGAAAAAAGTACGTGAAAAAAGTAGTAATGAAAGTACAGATACAGATAAAACAAAGAAGAAGAAAAGTAGTAAAGACTCTAAAGAAGAACGTAAAGACTCGAAAGAGGACAGGAGAGATAAGGACAAAAGTAAATCTGATAATCGTAAAAAATCTGACGGTAAAAATAAATCTGACGAATCTAAACATAGTGCCGATAAATCTGACAAAGTGAAAGAAGAAAGTGAGGATTTAAATGTGATAAAAGGTAGGGGAGTTGTAACTCCTGGTAACGGACTTAAAATTCACATTAAATTAGAGAGAGATGTAGAGAAAAAAGAAGTGGATAGTAAAAAGAGGGCTTCAACTGTGAAACGGCTTCCTGGCAGGTTTAGATCAACAGGATTAGAGGAGGAACCTGATTTACAAAAGAAAAAGCCTATGACACCAGACCCTGGTACGAACAATTCTAAACGACCAGGGTCTGAACTAAAACCTAAAGAGGAAGAACCTCCAGAAAAGAAGTCCCGTCTTCAGTTGTCGACTTCGTTAACACCCATTTCTACCACTAATACTGTTAACACATCACCGCCAATCACCTCGCCTGGAGATATACATGCCAAATTAAAGACAATTCCACCCGCAAAAAATAAAGGCCACGAAATCCATGAGAGTAGTATATTTATGGACATGATCACAAGGGGCTCAACAGAGCGACAACCTGGACCAATGAGAAGAAAGAAAAAGCTGCCATCCATTAATGGAAACTCACAATCTAATATAGCGCCAGTCAAAACTCCAACAACAACGACAGCTGCACCGACCATGCCCACAACGCCAACTACACCTCCCTCACCGACATCAATAAATACAGCAATAGCTAAATCTTTACCCTCAGTTCCCTCGTTTTACAAAGAAACGCTAGAAACGAATGAAGAAACTTCAGAGAAAACAGCAGAGAAAAGTCCCTCACCTACAGAGGAAGTAGAGGATACTGAAGTGGACCAGAATGGACCAACAGAAGATGTAGAAATGAAAGAACCTGAAGAAAATGGAGATTCTAACAACGCTGAGGAAAAGATGGATGATGCCACAACTGAAGATGCCACAGGACCTAAAGGACTATTGACGGCTGGTGCCACCACTAAGAAAAATAAAAAGAAGAAAAATGTCTCCTGGACTGAAGAATCGAAGCTTCGCGTTTATCATTACTTTGAAATGGATGAAACTGAAAGAGTGAATGTAAACAGAGTAGATTTTGACCAGTTGAAGAAACAAGACATTTTGATGGACAGAAGGGCAATGGAAACAGCCAAGAGAATGACCAGTGATAAAATGGTAGAACAAATAGCTTGGCGACGGCCCCCTGTGATTGAAGGCCTACCCCAAGGTTTTGAAAAAGGAGCAAATAGTGTAGAAAGAGATATCCAAAAAGAGAGAGAATTGGTTGTTCTGCAAGCTCTCTTTTTCAATAAAGACATGTTACCAGATAGTCCTGCTGAACCAGATCTAGAGCCATTTGAACCATCGGATCCTAAATTTATACCTCTTGAAGATGAGACGACAGGGTTTTATAATGTTCCTTTACTGTTCCTCTCTCATTTTCAGGAGACGACAGGAGGTGAAGACAACGTATACAATCATGATCCCAGTGAACAGTCACAATCCGTGGACGGAGATAAACCAATGTCACAACCCAATCAACAACCACCCATCAATCCTTCCAGTCTGATCCCTGATATGTTGAACATGGGATTAGCCCCTGGACCAATGGGACAAAGACCAAGACTTGGATTGTTAGGACAGGCACCACCAGGGTTTATGGGTGGGCTAGGACCAGGAATACCTGGTGGTCCTCCGCCAAGAATGCAAGGTCCACCAAACATGCAAGGACCACCAAGATTCCCTCCACCAGGACCTGATGCACAAGGTGATGGCTGGGGAGAGAACATGATGGGAGGACCTCCCGGTGCCATGGCTGGACGAGGAGGAAGAGGTGGTATGCCCATGAGAGGGAGTGGAGGCAGGATGCCAATGCCTGGACCACCAAACCAAGGACCACCAATGGGACCAGGTCCACCTATGCAAGGTGGACCACCCATGCAGGGACCCCCACAGATGAGAGGTGGAGGCAATCAAAGAGGAGGAAGAATGAGAGGGCCAGAAAGCAGATCTATATGTAGACATTTTGCTGGAGGAGGTTGTCGGCGAGGTACGACGTGCTCATTTTTACACCCAGGCGTAAACGGACCTCCGGTGTAG

Transcript

Bpl_scaf_49536-0.7

TTACATGGTCTAGCTTCTCTATAGTATAATAATATTCAGTCTTGTTCTATTTTCAGCCTCCAATAGACCCTCTCCAGTTGTTAAAAGCTTTATCACCTCTCTTGACGCCCAATGGAGGAATAAAAGGTCCAACTGAATCTACAAGGGTTTGTGGATTAATGAAAGAAGCATCAAAGTTGGTCAGTCGCTGTGTTTATATCAACATTCTGAAAGCTACCGAGTCGCAGAAAGCATTGGAAAAGTTTATTGAGGATGGTGGTTGGGACATTTTAAATCAATGGTTGACAGATTTCAAAGAAATTGATAATACCCAGCTGCTAACAGAAATAATGAAGTTATATCGGGAACTTCCTGTCACAGTAGATTTATTGAAGAAAAATAGTGCTGCAAAGACGATAAAACAGCTGGGGAAATCAGAAAACGAAGGTTTGAAAACATTATCAACAGAAATTGTAGATAAATGGATGAAAAAAGTACGTGAAAAAAGTAGTAATGAAAGTACAGATACAGATAAAACAAAGAAGAAGAAAAGTAGTAAAGACTCTAAAGAAGAACGTAAAGACTCGAAAGAGGACAGGAGAGATAAGGACAAAAGTAAATCTGATAATCGTAAAAAATCTGACGGTAAAAATAAATCTGACGAATCTAAACATAGTGCCGATAAATCTGACAAAGTGAAAGAAGAAAGTGAGGATTTAAATGTGATAAAAGGTAGGGGAGTTGTAACTCCTGGTAACGGACTTAAAATTCACATTAAATTAGAGAGAGATGTAGAGAAAAAAGAAGTGGATAGTAAAAAGAGGGCTTCAACTGTGAAACGGCTTCCTGGCAGGTTTAGATCAACAGGATTAGAGGAGGAACCTGATTTACAAAAGAAAAAGCCTATGACACCAGACCCTGGTACGAACAATTCTAAACGACCAGGGTCTGAACTAAAACCTAAAGAGGAAGAACCTCCAGAAAAGAAGTCCCGTCTTCAGTTGTCGACTTCGTTAACACCCATTTCTACCACTAATACTGTTAACACATCACCGCCAATCACCTCGCCTGGAGATATACATGCCAAATTAAAGACAATTCCACCCGCAAAAAATAAAGGCCACGAAATCCATGAGAGTAGTATATTTATGGACATGATCACAAGGGGCTCAACAGAGCGACAACCTGGACCAATGAGAAGAAAGAAAAAGCTGCCATCCATTAATGGAAACTCACAATCTAATATAGCGCCAGTCAAAACTCCAACAACAACGACAGCTGCACCGACCATGCCCACAACGCCAACTACACCTCCCTCACCGACATCAATAAATACAGCAATAGCTAAATCTTTACCCTCAGTTCCCTCGTTTTACAAAGAAACGCTAGAAACGAATGAAGAAACTTCAGAGAAAACAGCAGAGAAAAGTCCCTCACCTACAGAGGAAGTAGAGGATACTGAAGTGGACCAGAATGGACCAACAGAAGATGTAGAAATGAAAGAACCTGAAGAAAATGGAGATTCTAACAACGCTGAGGAAAAGATGGATGATGCCACAACTGAAGATGCCACAGGACCTAAAGGACTATTGACGGCTGGTGCCACCACTAAGAAAAATAAAAAGAAGAAAAATGTCTCCTGGACTGAAGAATCGAAGCTTCGCGTTTATCATTACTTTGAAATGGATGAAACTGAAAGAGTGAATGTAAACAGAGTAGATTTTGACCAGTTGAAGAAACAAGACATTTTGATGGACAGAAGGGCAATGGAAACAGCCAAGAGAATGACCAGTGATAAAATGGTAGAACAAATAGCTTGGCGACGGCCCCCTGTGATTGAAGGCCTACCCCAAGGTTTTGAAAAAGGAGCAAATAGTGTAGAAAGAGATATCCAAAAAGAGAGAGAATTGGTTGTTCTGCAAGCTCTCTTTTTCAATAAAGACATGTTACCAGATAGTCCTGCTGAACCAGATCTAGAGCCATTTGAACCATCGGATCCTAAATTTATACCTCTTGAAGATGAGACGACAGGGTTTTATAATGTTCCTTTACTGTTCCTCTCTCATTTTCAGGAGACGACAGGAGGTGAAGACAACGTATACAATCATGATCCCAGTGAACAGTCACAATCCGTGGACGGAGATAAACCAATGTCACAACCCAATCAACAACCACCCATCAATCCTTCCAGTCTGATCCCTGATATGTTGAACATGGGATTAGCCCCTGGACCAATGGGACAAAGACCAAGACTTGGATTGTTAGGACAGGCACCACCAGGGTTTATGGGTGGGCTAGGACCAGGAATACCTGGTGGTCCTCCGCCAAGAATGCAAGGTCCACCAAACATGCAAGGACCACCAAGATTCCCTCCACCAGGACCTGATGCACAAGGTGATGGCTGGGGAGAGAACATGATGGGAGGACCTCCCGGTGCCATGGCTGGACGAGGAGGAAGAGGTGGTATGCCCATGAGAGGGAGTGGAGGCAGGATGCCAATGCCTGGACCACCAAACCAAGGACCACCAATGGGACCAGGTCCACCTATGCAAGGTGGACCACCCATGCAGGGACCCCCACAGATGAGAGGTGGAGGCAATCAAAGAGGAGGAAGAATGAGAGGGCCAGAAAGCAGATCTATATGTAGACATTTTGCTGGAGGAGGTTGTCGGCGAGGTACGACGTGCTCATTTTTACACCCAGGCGTAAACGGACCTCCGGTGTAGCAGTAGTATAATGATAGTTTAACTGTCACGAGTATGAATCTCTACATTCTTCCAAGAATGATGGTACAGATATGTAGCCTTGAGGAAAACAGAGATGTGGCCTCTTATAGCAAGTGGTCACTTAATACAGGTTGTTGCATTTTTCAAGGTTGTATATGATGAGCTGAAAGACGCCATTAATTGAAAATGCTGGAAAATAACAAGTGTAAGCTAACTTCCTTTCTACTGCCAAAACAGCGAAAGTTGGTCAACGAGAGTTGTGTTCCATGAAGAAAGGTGATATCTTCCGACAAGAATCAAAATAGTGCTTCCTTTATAACAAGGTGTGTTCAATTGCATGGCAATGACATATGATTCCAAGGCAATTCTTTATTTTTTAGAAATGTCAGCAAACGTGTTCAATAAATCCTTGATCTAGTCAAAGATGAGTGGCAAAATGGACCAATCAAATTGAAGTCATTCATGCGTGTCATTTCGTAGGATGTGAGAATGTAACATACATAGACATTGGTGTGAAAACAAAATGGAACGGCTTGTTAGTGCACATCATTGTCACAGCTTTAATTGCTCAATTTTTTTTTTTTAAGTATTCAGACATGTTGTTTTTTTAATTTTATGTTGTAATCTGTATAATTAAGAACATTTGTATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08711	Med26	TFIIS helical bundle-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR003617	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan
IPR017923	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR035441	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46557	SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008157	Molecular Function	protein phosphatase 1 binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0072357	Cellular Component	PTW/PP1 phosphatase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17552	PPP1R10; protein phosphatase 1 regulatory subunit 10	-	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_49536-0.7 global RNA-seq network