Gene detail

Detailed information of Bpl_scaf_4952-3.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4952-3.16	DYNEIN INTERMEDIATE CHAIN	Bpl_scaf_4952	326839	340226	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_4952-3.16

GAAACGGAAGTTTCTCTTGAGCATGTCAGCATTAGAGTAACTATTGACAACAAATATCTTGCTCTGAAAGAACTTGAAGAACACATGAAAACGTGAAACAAACAACATCATCTGAAGAGAGCATAAAGTAACACAATGGAGATTCAGTATGTATATACTAAGAAACGGTCCGAGTTCGGACGACAGTGTAACTTCTCAGACAGACCAGCAGAACTACATGTTGATATTGCACCAAACCCATCCATTGCACAGGAATACATCGAAAGAAATCCAGTTGATATTGGAATACAATGTGTCCAGGAAATGTCAGAACATGAGATTAACACAGAAAGATTTGAAACTGGATCAAGAGGAATTAATCACACAGAAGGAGGTTGGCCAAAAGATGTAAATCCTGCTGAAGTAGAACAAGTCACAAGATACAGAAAGAAAGTAGAAAAAGATGAGATGTACATTAATACAATTCAACAACTGGGAACTATTATGGAAAGTAGAATTAAACAAAATAATGCAATAGATATATATCAAGAATACTTCGAAGATATTGAACTAGATTTGGTTGATGAAGCTCCCTCAGCAAAGACTATCAATGTATTCAGAGATCCCAATGAAATCAAGCGTACAGCAACACACATATCATGGTTTCCTGATGGACCAAAGAAACTGGCTGTTGCTTATTGTAACCTAGAATTTCAGGGATCAACACCAGATACCAGTATGGAATCTTATATCTGGGATGTTGAAAATCCCAACAAACCTGAGATGGTATTAAAACCAGTATCACCATTAGTATGTCTGGAATACAATCCTAAAGATTCTCACATATTACTTGGTGGTTGTTATAATGGTCAAATAGCATATTGGGACACACGAAAAGGTTCACAACCAGTTGAAATGTCACCTATAGAACAAAGTCACAGAGATCCTACATACAAAGCTATTTGGATTCAATCTAAGACAGGAATGGAATGTTTTTCTGCCTCTTCTGATGGTCAAGTATTATGGTGGGATATCAGAAAGATGGGAGAACCTACAGAAAAGTTATACTTAGATCCAACAAAGAAACAAGATCCAACAAAAGCTATGGGGGCTATGTCGTTAGAATATGAACCAACTATGCCAACAAAATTCATGGTGGGATGTGAACAAGGAACAATAATGTCATGTAACAGAAAAGCTAAAACACCAGCAGAGAAAATAGTAGCACAGTACAATGGTCATTTAGGTCCAGTATACTCATTACAACGTAATCCATTCTTCCCTAAAAACTTCCTCAGTGTTGGAGATTGGAAAGCAAGGATTTGGTCAGAAGATATCAGAGAATCATCAATCATGTGGACAAAACAATACCAGTCATACCTTACAGATGGTTGTTGGAGTCCTGTTAGACCCTCAGTGTTCTTCATTACAAAAATGGATGGTACATTGGATGTTTGGGATATTATATTTAAACAAAATGATCCAACACTCAGTTTACAGGTTTGTGATGAGCCTCTCCACAGCATACGAGTACAAGAGCACGGCAGACTGGTGGCATGTGGATCACACTCAGGAACAACAACATTGTTAGAATTATCAGAGGGTTTATGCACATTACAAAGAAATGAAAAGAATTTAGTCACAGCAATGTTTGAACGAGAAACAAGAAGAGAAAGGATTCTAGATTCACGACATAGAGAAATGAAACTGAAAGAGAGATCAAAGAGTTCTGCTGATAAAGACAAGGAGGAAGACAAGGAAGAAGAATATAACAGTGAAGATTTGTATGCTAAAGCTGAACAAGAATTTTATAAAATCATCGAGGAAGAGAAAAAATTAAATGAAAGACGACAAGCAACAAAAGATGAAATGGACAAGGTGGACACAGGAAAGCAATCACCAATCCAAGAAGAAGAGGGTGAAGAGAAGACAAATGGACAAGCGGAAAAAGACGAGGGAAAGAAAGATTAATTGACGTGAAAAGGAATCAAATGATTGACATTATAATAATATTAGACATTTTGACAACAAATCAGAGACATCTTGGACAGCATTTACGATTTAATATCGACAAAAGGACTATTGAATCATCTATATTTATTACACAGAATTGAGGTGGCATTCATCAAAGTGTTAAAAAAAATACCGTAACTTTTCTGATAAATTTAGCACTTACAAGCTAGTAATGTGTTATGTGCTATCAATGGCCAAAATGAAGATAAAAACTTGGCTGATATTGTCCATTTAAAATTGTTTTACTTTTTCTGTGATTCGATCATATTTATAAATTGTTAAAGGACAGTATACTTTTTTTATATTTGTTATAACAAATAAATTTTATGAAACACCA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050687	Family	Dynein Intermediate Chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0036157	Cellular Component	outer dynein arm	Interproscan
GO:0036158	Biological Process	outer dynein arm assembly	Interproscan
GO:0045503	Molecular Function	dynein light chain binding	Interproscan
GO:0045504	Molecular Function	dynein heavy chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11143	DNAI2; dynein intermediate chain 2, axonemal	-	Huntington's disease	ko05016	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_4952-3.16 global RNA-seq network