Gene detail

Detailed information of Bpl_scaf_4952-1.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4952-1.5	SPARC OSTEONECTIN	Bpl_scaf_4952	76259	110033	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_4952-1.5

AAGCACAAACACAAGCACAGATGGCACACAGACAGACCTGTAGTATTAAAAGATGATAGTAAAAAGGACATTGTAATAAGTGATGATACTCATCATCAAGAACTTATATTACCTAAAGAAACCAAACAGGATACTAATGTGAATTTAGCCTTTGACATTTTAACACCGACAAGTATTAAAAAGGGAGATAAATCCATTAAAAAGGAGAAAACTAATTACAATGTGTTCCTAGACCAGGAAGCAATATCCTTTGATTCCAGCAGTAAACATAATGAAGTAGAAAGTGGAAACAAAGATGTATTGTGGCATAATTTATATGAGATTAAGGAACCAGATAATGAAGTACCTAGTAAAGTTGTAAAAAACAAGGAACCAGCTCCTACAGTGAATAGTGTGGCAAAAGCTAAAGAAACGACAACACAAAATGTAAGAGAACCAAACGAAGGAAAGGTTCAAAATTATAACATACAAACAGCTTCACAAATTGAAGACTCTGAAAAAGATCAAACTATTGATGACAGTGTCGTTTCAAATGATGATATAGAGGTAGATGAGGATGAAGATGAAGATGGAATTGTTGATGATTACGACGATGACTATGAAGATTATAACTACTTTGAAAAAGATGAAAAAGAAAGTGAAGAGGAAAACGATGAGAAAGAAGTTCTGCCAGATAAAAAAAATACACAATCTGACAAACCTGACAAAAAGGAAAATGTACTGAGTTTAGATTCTGATGTTAAGGAGAAGTCTTTTGAAGATTTGATTAATGAAATATATGGTGGTGTTTTACCTTACTCTGCTTCCATAGAGAGTATAAAGGAACAAATGAAAGACAATCATCAGAAAGGAAGAACACACCAGGTAGTAAAGAAAGATATGGCAGAGGAAAGAGTAGATGAAAATGAAAATGAAAACCTTCCAGTAGTAGCTAAGAAAGGTAGATTGGATAATGTTAATAAGGAGAAATCTGATGCTTCACAATCTAAGGAGGACTCGAATGTCATTGATTTAAGTGATAACAAGAAAATCGTTTTTCATCAAGACATGTTAGAAAGCTTTGATGAAGTTAAAGACGATGACAAAAGTAAAACAACAGCGATGCCTACAAAGACATCAAAAACAGCAAAGCCTCTTAGATTGTCAACAACAACAAAACCTCCAAGGTCATCCACAACAACCAAATCTCCAAAGTCATCTTCTTCTAACCAAGTATTAGCTGTCAATTCTCAGTCTGAATTCAATAAACCTGAGAAAGCAAGTGAGAAACCAGAACCTACCAAAACGTCCAAAATAAATCCCTCCTTTAAGACCCCCAATGCTGCAGAGACCAGCCCAAATCCTCCAACTACTAAAGCAGTTGCTGTCACTGCGGCACCAGTGAGAGGGGTAAAGGAGTTTATACAGTCTAAACCATTACAACTATGTATAGATGATGGAGGCTGTTCTCCAGGACGAATGTGTCACAATGGTGTGTGTGTTTGTGGAGATAATGCATTATGTAAGAGCCACCATACAGTGGCAGTGTGTGGCTCTGATGGACAACTGTATCCTAGTCACTGTGAACTTCATCGTCAGGCGTGCGTCAAGCAGGTTCATATTAGAGTGAACCGAAATGGAGAATGTGGACAGAATTTACAGGAACACTTTGAAATACAGCCTACTTATCAAGGAACTCACTGTGAGTACCGAGTATTTAAAGGCCAGGAGGGAATCCTATGGGGAGATATACTGGTACCAGTCACAGTCAAATCTCTACTGGAATGCAGTGACATGTGTGATAAAAAGTCCTACAATGTCAATGGTGGCTGCTTTGCTTTCCAGTATTCTGATGATAAGAATGGGTTATGTTTTCTGTTTGAGAAACCTACAGACATTATCAGACATCCTAATTCTGACATGAATTTTTATGAGCAGAGAAGGTGTAAACCTAATCCAGATACCAAATGTGACTATGAGCCTGTCAACTTAGTAGCAGACCATATCTATGCCATGTGTAATGTCCAGACGAGTTCTGGAAAATCATTTGACGAGTGTCAGGATTCCTGTGGTAATTGTACAGCCTTTACCTACAGAAAAGACGATAAGATTTGTGACATACACAGCAGTAAAGCCTGTATTGATATGATGAATGCCCTAGGTATTGTCCACTATATGAAGAGATGTAATGAGAAAGGAGATGTCTGCCACATTTTAGAAGTGATTCCTGGAAAGTCACCATTTATGTGTAGCAAGGCCACCAGTAGTGTATCAAATCTAATAGAATGCCATGATGCCTGTATTCGTGGTCGATGTGAAGCATTCCAGTATTTAACAAAGGGAGATAAAACCACCTGTGAAATCTTCTTTGATAAATCTTGTATAGAACTATTAGATAAAAAGAAGGAAAATTATTATGTCAAAAGATGTACCAATCCAAAAGACTGTAACTACCATCAGATTCAGTCAGCCAGTATGATGCCATGTAGAGTAACCTCTAGTGATATGGATACAATGGAGAAATGTCTTCACATGTGTAACAACGATGATTGTTATGGGTTTATGTACAACTACGACAGCCTTGATTGTAGTCTGTACAGTGACCAATCATGTGTCCTCGGCAAAAATCTTAATTATGTCGTCAGGAAATGTCATTCTCTACAAGATATAACACAAGAAAATACTGGTACATTGAAAGTAAACCAGGTTCCAACTGTCAAAGAAAAACAAACCAGTCAAGACAAAAAGTCAGAGGAGAGTACCAAAATCAAGTCTGATGTCCAACAACCAAAACATGATGTAAAAACAACAGTACCACCAAAGCCCACAACAAAAGCTCCATACAGCGACATGCCAAAATCACTGAACAGTTTGAAGGAACATGATGTTGTTTGTGAACATGAAGACTATGTCCAATTTAAGTCTGATCTATTGAGATATCATTGTGTTAGATTTAGAGAGTCTAACTGTGACCAGAATGAGATTCCCAATAAAGGTTACATAGCGTCTTTGATGTTCAGCTATTATGACAGAGATATGAATGGAGAAATAGAAGGTGATGAATTATGGGAAATGCAAGTAGCAGAGAACCTAGAGCACATATCTACTATCTGTACACTGCTAGATATACTGAAATATGAAGTACAAGACAAAAAGTTGGATCATACACGCTTCTTAAATGCATTCATCGTTGCAGATGCTGTATTGAAGGAGGATTTAGAGATTATTCCGTTAGCATCAACAGTTGGGAATGGTTTAGAGATTAAATGTGGAGTGGAGACGTCTGACAACTCTGAGATAGTCTGGAGGAGAAATAATGTTGATCTGACCACCATTAGTATTCCTGATATGGCTGTGTTTTCTGATGGTACTCTGTATTTTGAAGCCATGGGTCTACATCATACTGGAAACTTTACTTGTCATGACAAAGTTAAACCAGGATTCAAACAGATTCATATGTTAAATGTCAACTTGCGCCCAATAGTGAGAGTCTCCCCATCAGAAAGAACCTTGACAGTGAACCATATAGATGTATTTATAGATTGTCATGTGGATGGTCTACCTCAACCACATGTACACTGGGAAATTAACAATGAACCAATACCATACAAACCAAAACACTATATCACAACACATAATAATGGTACACTCATTATCCATGATTCTAGCATCAAACGGGACGTAGGATCATATAAATGTACAGCGACAAACAGGGCTGGTACCAGTAAAGACATAGCTACCCTTGACAAACCAGGAACTCCTGAGGTACAGAAGTATGAAGCTTTCTATGTTTTCCATAAGAATGGATACACAGCATATCAACCAGAAAATTGTGAAACAATACGTCATGTTAAAGGTGACTTTGGTAACCTCAAATACATCCCAGAGGAGCTGGATAGAGCACCTTCCATGTGTGGCCTGGGACAAACATGTGTATGGGGAGAGGCTGTGAACGTACAGAACAAATATATCTACTCCAGTCAACCAGAGCAAAACAGAGTTATAATCATAGATATCGTTAACAACTTTAATCCTGTACAGTTTGTGAAGACGGACAAATACCCTGTCAAACTATATTATGTAGAACATTTAGACGAAGTGTGGGTTCTCTGCTGGAATGCCAACCATGATTCAGGAAGTAAAACAATTGTAGTGATCAGAGATGCTAGTAAAGACATCCGCCATCATATAGTACATACACAGCCTATAGGATACAGGTTTGATCTAGTTAAAGACATATTTATACCTCCACAAAATGACCTTGACCACAAGTTTAAACATGGATATGTAATACACAATAAACAGAGAGGATTGTTTAAACTTGACCTTGAATCAATGAGGTACACCAAGGCCGTGGACTTTGAAGATCAAGACTGCATTCCAAAGAGTTTAGCTTTTGTACCTATAGGAGGATACATCATAGTAGAATGTCAGAGACCAGTACAGTTGATTATGGACTACATAACAGACACAGTCATATCTAATCTCTCAATAAAGGGTACACCTTATGTTTCTCCTGATTCTAGAAATCTGGTGTTTGTTGACTTACAACAGGGTCATGTTACAGTATTCAGTATAGCAGATAATGGAAAGATACAGAAATTGTATGAGGTAACTACAGGTTCTTCTGTTAGTGAGGTGACATTTTTCCCATCAGACATCAGGACAGGATATGACATGTTCCTGGCAGCAGCAGACTCGGAATCAATCTATCCAATACTTCTAGATAATGGACAAGTTACAACAATAACAGGTAAAAATGAAGCAAGGTTAGAGCGGGTTTGGCCCTGGTCTAGAACAGTGAGAACCATTGTTAATGGAGATATGTTCAGTCAATATATAGCTGCACCAACTAAGTCAACGGTAGAGATTCTGAACGGCAGAGACAAGCGTATACATTGTAGTTTTGAACATTTAGACAGCCCTGATCAGATCGTGTATACAAGTACCAAGTTATAG

Transcript

Bpl_scaf_4952-1.5

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350	Domain	Kazal domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13866	SPARC OSTEONECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005518	Molecular Function	collagen binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan
GO:0050840	Molecular Function	extracellular matrix binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_4952-1.5 global RNA-seq network