Gene detail

Detailed information of Bpl_scaf_4939-3.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4939-3.10	EGALITARIAN, ISOFORM B	Bpl_scaf_4939	290759	306673	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_4939-3.10

TGAATTAGTCCTGTATTGTTCAATTTTATTTACATGTAGGCACGGTGTTTAAAAGGTGATTTCTTAATTATATACTCCTGACAAAATTGAATTTTCTTTGAAGTAAATGTAACACAGATAAACAAACTATAAACAGAAGGATATACGATATGTTTCAAGGATTAGTACCAAAGATCTAGTGAAATGACAAAAGTAAAAGTTATAACCTCGCTAGAAGCCTCTGAAAAAGTGGTAAAGGAATTATTGTGTCTGGATGTAGGTGTCGTTGGAGTAAATTGTAAAGGAAGTGACGTGGGACCTAAAGGTCGTATTACTCAAGTAACAGTGAGTACATGTGATGATGATGTTTATATATTTGACGTCAGACGCCAACCAAAAATAATATTAGACGGAGCAGTGATACGACTCTTCCAGTCCAGAGAACTAGTCAAAGTTTTTCATAACTGTAGTGCTGACTGTTCAGCTTTAAAGAAACTCTATGGCGTGGATGTTAATAACTATTTCGATACTCAGGTAGCATTTTCGACCATTCTAGAACAAAGTGGGTTCCCTCCAAGAAAGGTGTCATTGTCACATTTGTGTGAGAGATTTGTTATAGATAGATACGAACCAGATCGCACACAGCAGATGAAAATGACTGACGTAAATTTCTGGGCTTTACGGCCAATAACACGTGAAATGATCGACATATCTGCTGCCGATGTATTACCATTAGTTCAAATATACTTCAATCTTCAACACGATCTATCAACGGACATGATCAGCTGGTTTGAGGCTAAGTGTATTGATAACAAATTCAACAAAAAGAGAAATACAAAAGAAAAATGTAAAAGACTAAAAAAAATAACAAAGCAATAGGATACTTGTGCATACTATTTTATTATTTAGGAAATAAATCATGATAGTCAAAACTTTGTTGGAGAATTTAACATGGGTAAAAGTATTTTTGTAAAAACTTTTATCGCTCGCTATCGCTTGGAATAAATGTTGTACGAAAGAAATGTCGTCCAGGTTAAAATGTCATGCAAATTTGTGGTCTCCATGATTTCAATTTGATAAAAATACGTCTCTCTCTTTCACCCTATACTGATTTGTGGCGGCATGCGATATTTGAGGAAACCTCCTTACCTGTCAAATGCGGATGACCCTATGCTGGAGTCGAATTAAGGTTCCGATTGGGAGACTATGAAAGCGTTCAAATTTCAGATTAAACTGCTTTGTTTACTAAGAACAATTCGATTGGTGGAAAAAGACCATAACCCATATTTATCATATCATTAAATATTCATGACACCGGGTCACTCGCAGTATGTAACCCCGTAAAGGGGGTTTCTTCAGATCGCCAACGACACGACATTTCCGTCAAGGGGGTAAGTGGGAGATGTGATTTTAATCAGATTGCCATGATCTATTTCGATTCTAATAGGGACCAATTGTACTTATATAAAGCTTATTTCTTTCGAACCGTAAGACAATATGGGTATTGTATTTTATACAATCCACTAACATTCCTCATGTTCATGTTTACATTTGTTTTTTTTTCTACACAGACAAATACCCCATGTTACAATTAAAAATGTAAATAACAGACATTTTCCAATCAGATAGCATTTTCATATCATCAGTAAAAACAGACAAAATGCAAAAGGAAATAGTAAAATAAATCAGTAACCAGATATTAATGTCACTCAAGAATGATTACCACAATTTGTCTGTCCAGCCAGTCGGGTTACACAAATAACAAAAAAAAAAGAAAAAAAAGAAATTAAAATAATTTTTAGTTAGTATGTTAGTATGTAATTATCATGCTTATTTTGTACGATGTATGTTACAGTGACTGTAAGATAAAGAACAAAAAATCAAAAACAAATGGTCGTATAATGGTTAGATTTACAACTACCTATACAATCAATGCCTATCACCACTAAAGTTGCGAGCTCGAATCTCGATCATGGGAGGTGTACTCGATACAACATCATGTGATAAAGTTTGTCAATGGTTTGCGACAAGTCGGTGGTTTTACTCCGGGTACTGCGGTTTCCTACACCAATAAAACTGACCGCGACGATATAACTGAAATATTGTTGAATGTGGCGTTAAGTACCATTACTATAACCCCTAACACATTTACAACGTTATACCTGCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562	Domain	3'-5' exonuclease domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46814	EGALITARIAN, ISOFORM B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18740	EXD1, EGL; exonuclease 3'-5' domain-containing protein 1	-	Messenger RNA biogenesis	ko03019	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_4939-3.10 global RNA-seq network