Gene detail

Detailed information of Bpl_scaf_49378-7.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49378-7.17	OSTEOCLAST-STIMULATING FACTOR 1	Bpl_scaf_49378	674394	691667	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49378-7.17

ATGAATGACATGAAGACTTCTAATTCTATCAGTCCCACCAACTCTAACAGAAATAGTGCTGCAAGTAGTGATTCAGGAAGAGGTTACAGTACAGGCCATGGGGAACCTAGGTCTCCACATAATTATGTAAACGTACAGATAGTTAATCAACATCGGCTGTCGGGTCAGAGTTATGAATCAGGAGTATCGTCCAGACAGAGTTACCACAGTACATCTAGTTCTAGTGTGGGAAGTCTTGATCGACTAGAAGAAACAGGTCCAACTTCTAATATAAACGTAGCTGAACTTTTTCATTCCGGCATGCAGGACCATGAAATATTAAAGACCTGGTTGAGAGACCTGAGATATGAGGAATACTTTGGTCTATTTATACAAGCTGGCTATGATATGAGGACTATATCAAGGATGACACCAGAGGATTTGACAGCTATAGGTATCACTAAGCCTGGGCATCGGAAGCGACTGAAAGCTGAAATAGCCAGACTTAATATTAGTGATGGGTTACCTGATTATAAACCTAATACAATAGAGGAATGGCTACACTTACTACATTTGGAGCAGTACTGCAAAACCTTGACCAGTCAGGGGTACGCAGACATGGACAGTGTAACTGATATTACATGGGAAGATTTAGAGGAAATAGGAATACAAAAATTGGGTCATCAGAAGAAGATTATGTTAGCTGTAGACAGACTGAAAAGAATAGTATCAAATGTAAAAAGACAATCAACAATTGACGGAAAACGAGGATCTGCCGAAATTCTAGATCCACCACCTTCTAACAGTCCTAATAGACTTTCTGGAGACAACATCTTCAGTCATCGTCCGCGGAAATCATCCTCTGGAGACAGTCTAAATAATAGTGAACAATTTTATAATAACTCTCAAGGGAGACAGAGAGGTAGTGATGGCAGCTTAGATTCATGTTTCTTTCCTAATAGTCCGACAACTAAGGCATTTCAGCCAGATGTAATTGCAATTCAAGTGAAACGTAGTCAGTCACAATCATCGCCCAATTCTTCTCTAGCAAAAGATATGTCGGGACAAGCAATAACTTATCAGTCATTTCAAGGACCTTCCAGACGTTCACATGAGTTTGATAGGGATAGTACACCTACGGAGGAAATTGATAGTGGTTATAGGGCTCCTTTGGCCATGGCCCCAATCGTGCCTAAAGCTATGAATAAACCCAAACCTGTTGCTATGATCGTTGCCAAGGCAAAACGTTCAAGTAAGGAATACTCACCAGATTTAATTGAAGCTGAAAAAATTAATCAGTATCTTGAAGAACATATTGAAAAATCACCATCTGGAAACGGATGCTTTAAGCGGCAGAAAAGTGACCTTGGATCAGAAAATATTTATGATTCACCCAAACACTCTCCATATAATTCAGGGGTTAATATGAACTCAATGTCACAATCCTGTCCGCCGCCAGGTTTAAATGTTTCAGGACCACTTCACTCATCTACGCCAATTAAAAAAGTTCCGCCTCCGCCACCTCCAAAACGAAGCAACTCTATATCTAAACCAAATAAAGTAGAACAAGGTATGCAAAAGTCTCTAGAAAGTTCACCATATGCTACTACTGGGCTGAAAACTGGAAATCACAATTCACAGCAAATTATTGAAAGTCATTATATACAAAATTCAAATAGAAATTTTGAAAATTCACATAACAGTTTGAATGGTTCTAACCTTCAATCGGTAAATGTTTCATTGTCTTCGGGAAACTCACATTATGCTGGAAGTATGCCAAAATCAGCAGTTCCAAAGTTACAACCCAAACCTGTTACTTCTACAAAGCCTGCTGTGTCACCGAAGCCTAAAAAATCAGTCAAAGTTGCTCCTGAGCAACAAAAATCTTTTGCTAGCTGTGTACAAAGTCTGTCACAAAGATTTGGCAGTAGATGTGGTGACAATGATAATACTGATGACATGATTAACTCTGATGGAGAGGACTTTCCTCCTCCTCCACCTCCCATAGCTATGGATATAATTACTCCTAAACTTCATAATTATGGAATACCAAGTAAGGAGGATAAACAAAGTGAAGAATATAGACTTCCATATCATAGACAAAATAATGTTAATAGTGTACCGAATACTGTGCCAAATACAGAAGTACGGACATCTGTTGGAAGTGCTGTTCAGTCAATAGGTAGTCAAGGCAATGAATCTGTATCTGATAATCATGGTGCTCATAACAATTCTTTTTCTGCGTCAAAATTAAGAAGTACCTCGCTACGGATTAGTCCTACTAAAGATTCACATGGCGTGTCTCATGTGCCGGTCTCTTCACACAATCAGAGCCAAAATACGTCTCAACTCAATTCATTTAAACGTCAAAATGGAAATTCTTCAAATTCTGTAACCCAGAATAATACTACAAACACCATGAAACTTGAAGAAAATATTATAAAACTACCAAACAGTGTAGGTTCACTTCAGGTCAAACAGAACAGTGTAGGCTCACCTCAGGTCAAACCGAACAGCATAGGCTCACCTCAGGTCAAACCTAAACCTAAACGAGACAATGTTAGTCAGGAAAATCATATAGGAAATAAAGATAGAACTCCGCCTCCTTACGGTACTTTGAAACGTAACGACTCAACATCAAGTCATGATTCTAATATATCAACATCTAGTGTAGATTCTAATACTTTACCGTTTGCTAATGAGAATGTGGGAACAATTAAACAACGAGCTCCTCCTGCTAAAACCTCAATAGTACCAATTAATGAAGGAGAAAATGACCTCAATGTGACCTTGTTCAAGCAGAGGTCAGAAACAATGACTGCATCCTTACAAAAGAGAGATGACTATATGGAACAGAGAAAACAAAGCAACACCAGTATTGACAATTCAGAAGATGTATTAACAGACATAGACTTTATGTTACAAGGATTAACAGATGAACTAGATGCTATGTTAGAGGAAGAAGTACTCAATAATGGATGA

Transcript

Bpl_scaf_49378-7.17

TTATTTTGTAGAATTTAAATGGGAGAGTGCCTCACTACAATGGAGAAGACAGATCACCTGTGCCTTACCACTTAATGAATGACATGAAGACTTCTAATTCTATCAGTCCCACCAACTCTAACAGAAATAGTGCTGCAAGTAGTGATTCAGGAAGAGGTTACAGTACAGGCCATGGGGAACCTAGGTCTCCACATAATTATGTAAACGTACAGATAGTTAATCAACATCGGCTGTCGGGTCAGAGTTATGAATCAGGAGTATCGTCCAGACAGAGTTACCACAGTACATCTAGTTCTAGTGTGGGAAGTCTTGATCGACTAGAAGAAACAGGTCCAACTTCTAATATAAACGTAGCTGAACTTTTTCATTCCGGCATGCAGGACCATGAAATATTAAAGACCTGGTTGAGAGACCTGAGATATGAGGAATACTTTGGTCTATTTATACAAGCTGGCTATGATATGAGGACTATATCAAGGATGACACCAGAGGATTTGACAGCTATAGGTATCACTAAGCCTGGGCATCGGAAGCGACTGAAAGCTGAAATAGCCAGACTTAATATTAGTGATGGGTTACCTGATTATAAACCTAATACAATAGAGGAATGGCTACACTTACTACATTTGGAGCAGTACTGCAAAACCTTGACCAGTCAGGGGTACGCAGACATGGACAGTGTAACTGATATTACATGGGAAGATTTAGAGGAAATAGGAATACAAAAATTGGGTCATCAGAAGAAGATTATGTTAGCTGTAGACAGACTGAAAAGAATAGTATCAAATGTAAAAAGACAATCAACAATTGACGGAAAACGAGGATCTGCCGAAATTCTAGATCCACCACCTTCTAACAGTCCTAATAGACTTTCTGGAGACAACATCTTCAGTCATCGTCCGCGGAAATCATCCTCTGGAGACAGTCTAAATAATAGTGAACAATTTTATAATAACTCTCAAGGGAGACAGAGAGGTAGTGATGGCAGCTTAGATTCATGTTTCTTTCCTAATAGTCCGACAACTAAGGCATTTCAGCCAGATGTAATTGCAATTCAAGTGAAACGTAGTCAGTCACAATCATCGCCCAATTCTTCTCTAGCAAAAGATATGTCGGGACAAGCAATAACTTATCAGTCATTTCAAGGACCTTCCAGACGTTCACATGAGTTTGATAGGGATAGTACACCTACGGAGGAAATTGATAGTGGTTATAGGGCTCCTTTGGCCATGGCCCCAATCGTGCCTAAAGCTATGAATAAACCCAAACCTGTTGCTATGATCGTTGCCAAGGCAAAACGTTCAAGTAAGGAATACTCACCAGATTTAATTGAAGCTGAAAAAATTAATCAGTATCTTGAAGAACATATTGAAAAATCACCATCTGGAAACGGATGCTTTAAGCGGCAGAAAAGTGACCTTGGATCAGAAAATATTTATGATTCACCCAAACACTCTCCATATAATTCAGGGGTTAATATGAACTCAATGTCACAATCCTGTCCGCCGCCAGGTTTAAATGTTTCAGGACCACTTCACTCATCTACGCCAATTAAAAAAGTTCCGCCTCCGCCACCTCCAAAACGAAGCAACTCTATATCTAAACCAAATAAAGTAGAACAAGGTATGCAAAAGTCTCTAGAAAGTTCACCATATGCTACTACTGGGCTGAAAACTGGAAATCACAATTCACAGCAAATTATTGAAAGTCATTATATACAAAATTCAAATAGAAATTTTGAAAATTCACATAACAGTTTGAATGGTTCTAACCTTCAATCGGTAAATGTTTCATTGTCTTCGGGAAACTCACATTATGCTGGAAGTATGCCAAAATCAGCAGTTCCAAAGTTACAACCCAAACCTGTTACTTCTACAAAGCCTGCTGTGTCACCGAAGCCTAAAAAATCAGTCAAAGTTGCTCCTGAGCAACAAAAATCTTTTGCTAGCTGTGTACAAAGTCTGTCACAAAGATTTGGCAGTAGATGTGGTGACAATGATAATACTGATGACATGATTAACTCTGATGGAGAGGACTTTCCTCCTCCTCCACCTCCCATAGCTATGGATATAATTACTCCTAAACTTCATAATTATGGAATACCAAGTAAGGAGGATAAACAAAGTGAAGAATATAGACTTCCATATCATAGACAAAATAATGTTAATAGTGTACCGAATACTGTGCCAAATACAGAAGTACGGACATCTGTTGGAAGTGCTGTTCAGTCAATAGGTAGTCAAGGCAATGAATCTGTATCTGATAATCATGGTGCTCATAACAATTCTTTTTCTGCGTCAAAATTAAGAAGTACCTCGCTACGGATTAGTCCTACTAAAGATTCACATGGCGTGTCTCATGTGCCGGTCTCTTCACACAATCAGAGCCAAAATACGTCTCAACTCAATTCATTTAAACGTCAAAATGGAAATTCTTCAAATTCTGTAACCCAGAATAATACTACAAACACCATGAAACTTGAAGAAAATATTATAAAACTACCAAACAGTGTAGGTTCACTTCAGGTCAAACAGAACAGTGTAGGCTCACCTCAGGTCAAACCGAACAGCATAGGCTCACCTCAGGTCAAACCTAAACCTAAACGAGACAATGTTAGTCAGGAAAATCATATAGGAAATAAAGATAGAACTCCGCCTCCTTACGGTACTTTGAAACGTAACGACTCAACATCAAGTCATGATTCTAATATATCAACATCTAGTGTAGATTCTAATACTTTACCGTTTGCTAATGAGAATGTGGGAACAATTAAACAACGAGCTCCTCCTGCTAAAACCTCAATAGTACCAATTAATGAAGGAGAAAATGACCTCAATGTGACCTTGTTCAAGCAGAGGTCAGAAACAATGACTGCATCCTTACAAAAGAGAGATGACTATATGGAACAGAGAAAACAAAGCAACACCAGTATTGACAATTCAGAAGATGTATTAACAGACATAGACTTTATGTTACAAGGATTAACAGATGAACTAGATGCTATGTTAGAGGAAGAAGTACTCAATAATGGATGACCCTGTTAAAAAATAACCAAAGCACCATCCTTTATATCAGACTGGTCCCATCATGTCTGCAGTCCAAAAGGAACCAGTATATTTCTGGTTCCTTTGACTGGTACCTGCAGATATTCTATCTTTAAGCAGGTGTGCTAATATAATGCATACTTCTTTGCTTTATCAAGTACAGGTATTTGGTCTTGGTGATGGTAAAGAAATCCCCAGGGTATGGAATAAATCTCACAATAATATAACATGATATAAAGAAGATAATGTGTTAATGTATAACATCACAGTCTTGTCTTCTTAAAGTACTCACAAACATTATACATGTATTGGATCATTGGTCATTATGGTCTCTCCTCTTGGTGCTGATTATTTGATTCCAATCTCCAACATTACAACATGGATATGTGCTAGCTTAGCGTTCAAGAAACGCCACCTCTGAAGGATTTATCTCCTAATAATGGTGCGTGAGTAACTGAACAGTTACAAACATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR035497	Domain	Caskin1/2, SAM repeat 1	Interproscan
IPR035498	Domain	Caskin1/2, SAM repeat 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24155	OSTEOCLAST-STIMULATING FACTOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005925	Cellular Component	focal adhesion	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007185	Biological Process	cell surface receptor protein tyrosine phosphatase signaling pathway	Interproscan
GO:0007409	Biological Process	axonogenesis	Interproscan
GO:0019903	Molecular Function	protein phosphatase binding	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_49378-7.17 global RNA-seq network