Gene detail

Detailed information of Bpl_scaf_49256-5.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49256-5.17	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	Bpl_scaf_49256	441023	523397	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49256-5.17

ATGTTTAGTTTCAGAGGACCTCAGCTGACACAAAAAGGCAAGGTAACTACACTAGTCAAGGGTTCAATTGTTGTCGATTGGCAGAAATCTGAATCGTCAAGAACTGAACATAGTCGCGTAGAAAATAAACTGCTGTCTTGTGATGAAAGGATTGGTCCACCAAGAATCAGGAAAAAGAACCAGAGATTTTTCAATGATGATGAAGACACTACATATTCACATGCCAGATCTCCAAGGAAACAACCAAAAGTTATTAATACAAGAAGTGGACTTAGTGTAGCTGATCGTAAAGTAGCACAATCTATCGGTGTCCGTCTAAGAAACTTCCTCAAATTACCAAAAGCACATAAATGGGTGTGCTACGAATGGTTTTATTCAAATTTAGACATACCACTGTTTCTAGGAGAAAATGACTTTTGTATATGTTTAAAAGAAACTTTTCCACAATTAAAGACTCACAAATTGAAGCAAGTAGAATGGTGTAAGATCAGAAGACTGATGGGAAAACCAAGAAGATGTTCCCCAGCCTTCTTCGATGAAGAAAGAAGTGCTTTAGAAACCAGAAGAAACAAAATCAGACTACTACAACAAAGAAAGCTTTCAGAACTTAGTAACTTTAAAGATCTTCCCAATGAAATTCCCATGCATTTGGTAATTGGAACTAAAGTCACAGCTCGTTTACGGAAACCTCAGGATGGGTTGTTTACTGGTGTTGTAGATGCTTTAGATACAGTATCAAATTCCTATAGAATAATATTTGATAGGCCAGGGCTGGGAACACATTCAATACCTGATTATGAAGTTTTAAGTAATGATCCTGATGAAACAATACCTTTATCTGCCTTCCAACAGAAACACAGACCTCGACAAAATAATCCATTGTTTTCTCCACCAAAATTTGTACCAAGCCTTGGTTCTCCTAATGCTGATTTACAAAATGATCCATTACTTAGTGGTTCTCCATTTAAAGGGAGGTTAATGAGCTTAGAAGGAGGAACCTATGGTGGATTTCCTATTAAATTTCTTGTACAAGTTACAAAATTATCAAAAATTTTATCCATAAAAAAACAGTGGATACAAGAATTAAAGGAAATGAACACTCAAGCAGAAAAACAGAAATCTTTTCAGCAGCCATTATCACAGGATTTCCAGCAGAAATACGCAAATATTGTTTTAGAGTTAGAATCAGTTAACAAGGAGTTAAATGATTATCTGATAGGAGTACAACACTATTGTCAAGAGTTAGCACCCGAGCAAGGATTAACTCCCTTTGACCAGCCATCAGAAATTAGAACTAGATGTGATGAACAAGCTGAGGAAATGGTCAGCAGAATAAGTACGAATATGTTTCATAGTAAGAAAACAAAGAACCAGAACGTGATAGATTTAATCTCTAGTCTAACTTCTCTAATGTTACAAGTACAAGGCACCACCAAAATGATACGTCGAATTCCACTTAATTTTAGAGATGTTCCTTGGTTGGAGTTTTACTTACAGTCCTGTCAAAAGCTTCATTTAAAATCTGTGGAGAAGTCCATACAACACAGAAACCATGGTAACAAGTTATTCCAGGTGAAGAAGTATGCAGAAGCACTTGCACTATATACACAGAGTATCATGGAAGCGCCAGACAATACACAGAATCTAGGTTTGGCCTATGGAAATCACTCTGCAGCAAACTTTTACCTACAGAATTACAAGGAATGTGAAGAGGGCATCAAGTTAGCATTAGAGAACCAGTATCCACAGTCAACATCTTACAAACTATATCTACGATGGGCACAGTGTCTATATCGTACTGGAGATGTGGATCAAGCTACACATAAATTGAAAATATCAAAGAATGCAGTCTTAAAGAATGAGAGCATAGAAGAGAAAAGGAAAGTTCAACTTCTAGATGAAATGAAATTACTTGAAACAGAAATTGCAAAGAATAGGAATCAAGAAAAAGTTGGTATTTCTGGTACATGTACTGATGTACCTGAGGTATACCAAGGTAGAAATACTGTCTTAACACAAGCTTCCAGTGCAGTTGCCATGGTATATAATGTAAACAAAGGCAGACATATACAGGCAACAACCAAGATACCAGCTGGAAGTACTGTGATTGTAGAAAAACCATATGCTAGTGTATTACTGCCAGACCATTATCTAACACACTGTCATCACTGTATAGGTCGGCTTACTACAGTTATACCTTGTAAAAGATGTACACTGGTCCTGTATTGTAGTGAGTCCTGTCGAGAAGAATCCTGGTCTGTTTATCATAAAATTGAATGTCAGTATCTAAATATATGTCACTCTATAGGAATAGCTCATCTTAGTCTCAGAATAGTGTTAACGGCAGGATGGAAATATTTACTATGTTTTAGAGAACAGATGACGACATCAGAATTTTATCAAAATAGGAACAGAATTGGTGGAGTATTAGAGGATGGTACTTATGATAAAACTTACCTGTCTGTTTATGATCTAATGACACATTCTGATGACATAGAAATAGTGGATTCCTTTCAATATTCATTGACAGCATTGTTATTAATCACCATTTTGAAACAATCATGCTGGTTGAATACAGGATCTGCAGACGACACTTTTCTGACAAATGGAGAACCAAAAAATTGGACAGAATTACAATTTTCTCAAGATGATATTTATATTGGTGGTCTTTTGTTAAGACATGTAGAACAATTAATTTGTAATGGGCATGCTATTACTGAACTACAGATAACTCAAATCTCTGACAGCTCGTTGGTTGACAGTAAAAGTCAAGAGAGGGTTGCTACTGCGATATATCCAACGACAAGTCTACTGAATCATTCTTGTGATTCATCCATCATAGCAGGGTTTGACAAAGACCTACTGGTTGTTAGAGTGATAAAGGATATTGAAGCTGGGGAAGAAATATTTAATTGTTATGGTCCAGACCACAAGAGAATGAGTAAATTAGAAAGACAAGATGCTCTTAAAACTCAGTATTTTTTTACATGTCAATGCTCAGCTTGTCAAAAGGAAGACAAACAAGATGTCTTCAATAGTTTCTGTTGTCCAATGTGCAGAGAAATGGTGAAAATCAGAAACGATATTTATACCTGTACATCATGTGACTTTACTGGAAAATTAGCTGACTTAATTAAAGAGGAAAAGGCATGCAAGGAAATGTTTATAAATGGACTGGAATGTTTACAGATACAAAATGTCAAAGGTGCTATACAGAAGCTTAAGGACTGTTTAGATTTACAGATAAAGATACTTTACAAACATCATAAGAACCTAGCAGAAACTCAAGACTGTCTAGCAAGATGTTATGCTATTGCAGAACAGTATGACAGGGCTGTTCCATACTTAAGAGAGAGTGTTGACACAGTATGTCAGCTATATGGAGACAACAGTATAGAGTATGCGAATGAACTACACAAGTTTGCAGGAATACTTTGTCATGCTAATGAAGTTAAAGAGTGTTTGACTGTGATAGACAAAGCTGTTCATATATTTACTTTACACTTCGGTGATAAGTATGAATTTGTTGAAGAATTAGAAAATATGAAAATATTTGTGATTGAAAATAAAAAATTGTAA

Transcript

Bpl_scaf_49256-5.17

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856	SET	SET domain	Family	Interproscan
PF01753	zf-MYND	MYND finger	Domain	Interproscan
PF06584	DIRP	DIRP	Family	Interproscan
PF19438	LIN9_C	LIN9 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR033471	Domain	DIRP domain	Interproscan
IPR044421	Domain	SMYD4, SET domain	Interproscan
IPR045831	Domain	LIN-9, C-terminal	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR052097	Family	SET and MYND domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46165	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0042826	Molecular Function	histone deacetylase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_49256-5.17 global RNA-seq network