| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_49256-3.6 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 | Bpl_scaf_49256 | 307716 | 341145 | - |
| CDS | |||||
| Bpl_scaf_49256-3.6 | |||||
| Transcript |
| Bpl_scaf_49256-3.6 |
| Protein |
| Bpl_scaf_49256-3.6 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13181 | TPR_8 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF13374 | TPR_10 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF13424 | TPR_12 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF14559 | TPR_19 | Tetratricopeptide repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR019734 | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR031101 | Family | RNA polymerase-associated protein Ctr9 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14027 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000993 | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006368 | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0016593 | Cellular Component | Cdc73/Paf1 complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K15176 | CTR9; RNA polymerase-associated protein CTR9 | - | Transcription machinery | ko03021 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_49256-3.6 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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