Gene detail

Detailed information of Bpl_scaf_49115-4.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_49115-4.10	ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1	Bpl_scaf_49115	490068	521509	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_49115-4.10

ATGTCTAACATTACAAGTTATCTGAGAAACAGAGAATTAGGATGTTGTAACAAGAAATGGCAGCTAAATGAAAAAGTCCAGGATTTCTATGATGATATTGCTAGCAAACCTGTTTTAAACAAGGCATGTTCCTTGTCAAGAAGATGTAGAGCTACATTTCTGGTAGATTTTAGTCCAGACAGGACAAAGGTAGCTTCAACTCATGGTGATCACAGTGTAAGAATAACAGAGGTAGCCACAGGGAAGTGTACACATGTCTTAGAGGGACATCCTAGAACACCATGGTGTCTCTCATTCCATCCATCATCCAATCAAATTGTAGCTTCTGGTTGTCTAGATGGAGAGGTCAGAATATGGGACCTTTTTGGTGGTGGATCAGAGGTATGGAGATGTAAAGAACACTCTGTAATAGCTTCACTAGCATTCCATCCTACAGACAACCTCCTTGTGTTTGCTGCTGGTAATACTATATACTTCTGGGACTGGAGTAAACCTGAACCATTTGCTTACTGTAGTACTAAGAATGAATACGAAAGAGTCAGATGGATCGGTTTTCATCCATTGGGACAATACTTGTATACAGGAATCACAAACACTGCCACACTACAACAAACTAATCCAAGAGTGTCGTTCATCAGGTATCCCCGTATGACAATAAGTGGTGGAAGTGGAAGACCAAATACTCAGACACAGAGATCACAAAGATTAAGTAATGTATATGACAATTTAGTGGAATGTTTCCAGACTTATCAGAGAGACAGAGTTATAAACCTGGCTTCTTCAGGATCAGGTCATGTTGGAAATTATCCAGAGAGACATGAATCTGATCTGGACACTCCCCATTCACCAGTCCATGAGGAGGGACTCAATTATGCCCGTCAGTATGCCAGACATATAACAGAAACCGCAGCGTCTGCAGCAGCAGAACAAGTAATAATTCCTCACGATGACACTGAACCTGGACCTTCCTCTAGTCATCAACCGTCAGTCATTTCTGAGGACTTATCCTGGAGCCCTCCTCCTAGGACTGCTCCTCCCGAGGATGAAATTGATATAACTGTGCAATCTGTATTTTCTGCAGAATCTAGGCCAGTTGTCATAGTATCAGCTACGCCTGAGCAATCAATGTCAAGGCCATTAGTAGATTCAAGGACAACAGCAGGAATTATTGGAAATCGTAGAACAAATTTTCTCCAAAGACAAATTTATGGGCAGCATAATATTGACAGTGAAAATATTTCTAATGGTGCATTATTATCTAGCCTAAGAGGTGGTCAAACATCAGGGCCATGGTCAAGGTTAGATCATAACGCTGGTTCTTCATCTGGGTCATGGTCAGGTTTAGACCATAACAATGGGACCTCATTAGGGTCAAGGTTAGATCATAGCAACTGTGATGGACATTGTGATGTGTGTAGGAACTATAATTGGACATTTCAACGTCGAAGTAATCAGTCATCTCTTCAGTCACGACAAGAGAGGTTAGAAAGTAGGAGACGGTATTGTAGAAATCGTTTATCTGCTTTGAGGAGGCAAAATAACTTATCAAATTTTAACGAAAGATCTTCAATACGTAGTGATAATGTTAGATATCTACGTTATTTTCAATCGAGAGTGCAAAACAGGACTCAAGTACTAACCAATCAGAATGGACAAACATGTACTAATACGGAGGCTGCATCAAGCCAGTCTCACACGGACGGTACTTCAGGTCAGAATCCACAAGAGGAAACAAATTCTATTACAAATTCTGAAGGGAGTACTAGTAGTAATAGCTCGTCATCTTTGACAGAAAGTTATGACAATATACGGGAAAATTTTGTGTCAATTACAGCTCGATTAGAACAGGAAATGAACGAATTGGATCGTAGAATCAATGAATTACGGAACAGTTTTCAGGAGAGTATAAGACAGTTACAAGAGGATCATGGGATAGGAGAAGATAATAACGGACAGACACCTCAAAGAGATGTTCCGCTGAACCAACAGGTAACCAGACCTGTTATCACGGTGACAAGATGTCGAGAATCTCATGATAATGACCAAAACCAACAAGGTAACCAACAAACAAGAGATAGAACCCACCTACTAGAAACTGCTCTTCGTACTTCTGTGTCTAGTCCTAGACAGACTCAACCCACACCACCTGTAGTAACATCTAATCAAAGTTCTAGAACAGAGGCTCCAACCAATACCTGGCAGACATTACAAAGACATCACCTACACCCACACTACTCTGTCAGTATACTAGATGATACTATAAATAGACCACAGGATGCTGTACAGAGGGCTATAAATCATACAATCGCTGGTGCCTTCATGGGACGAGGTGAAGCTGCCGTAGCTAGTAACATTGTGAACCAGACATACCGTATACAGTCATGGGATCTCTTTTTAAATCCTGTTCCTGATTTATCTGATGACACATCAAATATAGTTGTGCCTAACTGTAAACTGCATAATGAAGCCAGTTGTGATATTTCCCAGGATGGAACTCTATTGGCTACATTTGCACCCAGTCATCGAGGATTTCCAGATGATAACATTATGGCTGTCTATTCTCTTAAACCAGATTCTTTAGGGCAGTGTCTCTATACAAAAAGTTTTGGTCCTAATGCAATATCTGTTAGTATTTCACCCAGAAACCAGCATGTTTTAGTAGGACTAGCTGCCAAGAGGTTGATATGGATCTTTACTACAGATCAGTTAGTAGCGCAGATTTACAAACTGGATGATGAGAAAGCTGGTGAATTCTCTACTAAGCATGTTATGGATATATTGCATCCCTGTGATATTGAAACTAGGTCACATGTCAGTGTGAACTCGGCCAGATGGTTACCTACACCAGGCCATGGTGTTGTATATGGCACGAATCGTGGAGATCTTCAGATATGTACACCAGGGTTCTTGAAAGTATCAGAAGAAGAGGAGGGAACCAGTGCCAATTCATCCATCAGTCGTCGTAGCATTATGTTTGGAGGCATATCTCGTACCCCAGTAAATGTTAATAGTATAGCTACCCAGACACCTGCTGTCAGACGATCAATGTCAACTCAAACTGAGGATTCAGAATCTAATGTTATTGTATAA

Transcript

Bpl_scaf_49115-4.10

TGTATTTTGGGGTGAAAAGTTCAACCTCATTCTGCCGATATACAGTTTGAAAACACACTGAATGTTTATCTAAACAGACCATTTTGATTAAGAAAATGGTGATTTAAGGAGACAACATGGATATGTGACTGTATAATGTCTAACATTACAAGTTATCTGAGAAACAGAGAATTAGGATGTTGTAACAAGAAATGGCAGCTAAATGAAAAAGTCCAGGATTTCTATGATGATATTGCTAGCAAACCTGTTTTAAACAAGGCATGTTCCTTGTCAAGAAGATGTAGAGCTACATTTCTGGTAGATTTTAGTCCAGACAGGACAAAGGTAGCTTCAACTCATGGTGATCACAGTGTAAGAATAACAGAGGTAGCCACAGGGAAGTGTACACATGTCTTAGAGGGACATCCTAGAACACCATGGTGTCTCTCATTCCATCCATCATCCAATCAAATTGTAGCTTCTGGTTGTCTAGATGGAGAGGTCAGAATATGGGACCTTTTTGGTGGTGGATCAGAGGTATGGAGATGTAAAGAACACTCTGTAATAGCTTCACTAGCATTCCATCCTACAGACAACCTCCTTGTGTTTGCTGCTGGTAATACTATATACTTCTGGGACTGGAGTAAACCTGAACCATTTGCTTACTGTAGTACTAAGAATGAATACGAAAGAGTCAGATGGATCGGTTTTCATCCATTGGGACAATACTTGTATACAGGAATCACAAACACTGCCACACTACAACAAACTAATCCAAGAGTGTCGTTCATCAGGTATCCCCGTATGACAATAAGTGGTGGAAGTGGAAGACCAAATACTCAGACACAGAGATCACAAAGATTAAGTAATGTATATGACAATTTAGTGGAATGTTTCCAGACTTATCAGAGAGACAGAGTTATAAACCTGGCTTCTTCAGGATCAGGTCATGTTGGAAATTATCCAGAGAGACATGAATCTGATCTGGACACTCCCCATTCACCAGTCCATGAGGAGGGACTCAATTATGCCCGTCAGTATGCCAGACATATAACAGAAACCGCAGCGTCTGCAGCAGCAGAACAAGTAATAATTCCTCACGATGACACTGAACCTGGACCTTCCTCTAGTCATCAACCGTCAGTCATTTCTGAGGACTTATCCTGGAGCCCTCCTCCTAGGACTGCTCCTCCCGAGGATGAAATTGATATAACTGTGCAATCTGTATTTTCTGCAGAATCTAGGCCAGTTGTCATAGTATCAGCTACGCCTGAGCAATCAATGTCAAGGCCATTAGTAGATTCAAGGACAACAGCAGGAATTATTGGAAATCGTAGAACAAATTTTCTCCAAAGACAAATTTATGGGCAGCATAATATTGACAGTGAAAATATTTCTAATGGTGCATTATTATCTAGCCTAAGAGGTGGTCAAACATCAGGGCCATGGTCAAGGTTAGATCATAACGCTGGTTCTTCATCTGGGTCATGGTCAGGTTTAGACCATAACAATGGGACCTCATTAGGGTCAAGGTTAGATCATAGCAACTGTGATGGACATTGTGATGTGTGTAGGAACTATAATTGGACATTTCAACGTCGAAGTAATCAGTCATCTCTTCAGTCACGACAAGAGAGGTTAGAAAGTAGGAGACGGTATTGTAGAAATCGTTTATCTGCTTTGAGGAGGCAAAATAACTTATCAAATTTTAACGAAAGATCTTCAATACGTAGTGATAATGTTAGATATCTACGTTATTTTCAATCGAGAGTGCAAAACAGGACTCAAGTACTAACCAATCAGAATGGACAAACATGTACTAATACGGAGGCTGCATCAAGCCAGTCTCACACGGACGGTACTTCAGGTCAGAATCCACAAGAGGAAACAAATTCTATTACAAATTCTGAAGGGAGTACTAGTAGTAATAGCTCGTCATCTTTGACAGAAAGTTATGACAATATACGGGAAAATTTTGTGTCAATTACAGCTCGATTAGAACAGGAAATGAACGAATTGGATCGTAGAATCAATGAATTACGGAACAGTTTTCAGGAGAGTATAAGACAGTTACAAGAGGATCATGGGATAGGAGAAGATAATAACGGACAGACACCTCAAAGAGATGTTCCGCTGAACCAACAGGTAACCAGACCTGTTATCACGGTGACAAGATGTCGAGAATCTCATGATAATGACCAAAACCAACAAGGTAACCAACAAACAAGAGATAGAACCCACCTACTAGAAACTGCTCTTCGTACTTCTGTGTCTAGTCCTAGACAGACTCAACCCACACCACCTGTAGTAACATCTAATCAAAGTTCTAGAACAGAGGCTCCAACCAATACCTGGCAGACATTACAAAGACATCACCTACACCCACACTACTCTGTCAGTATACTAGATGATACTATAAATAGACCACAGGATGCTGTACAGAGGGCTATAAATCATACAATCGCTGGTGCCTTCATGGGACGAGGTGAAGCTGCCGTAGCTAGTAACATTGTGAACCAGACATACCGTATACAGTCATGGGATCTCTTTTTAAATCCTGTTCCTGATTTATCTGATGACACATCAAATATAGTTGTGCCTAACTGTAAACTGCATAATGAAGCCAGTTGTGATATTTCCCAGGATGGAACTCTATTGGCTACATTTGCACCCAGTCATCGAGGATTTCCAGATGATAACATTATGGCTGTCTATTCTCTTAAACCAGATTCTTTAGGGCAGTGTCTCTATACAAAAAGTTTTGGTCCTAATGCAATATCTGTTAGTATTTCACCCAGAAACCAGCATGTTTTAGTAGGACTAGCTGCCAAGAGGTTGATATGGATCTTTACTACAGATCAGTTAGTAGCGCAGATTTACAAACTGGATGATGAGAAAGCTGGTGAATTCTCTACTAAGCATGTTATGGATATATTGCATCCCTGTGATATTGAAACTAGGTCACATGTCAGTGTGAACTCGGCCAGATGGTTACCTACACCAGGCCATGGTGTTGTATATGGCACGAATCGTGGAGATCTTCAGATATGTACACCAGGGTTCTTGAAAGTATCAGAAGAAGAGGAGGGAACCAGTGCCAATTCATCCATCAGTCGTCGTAGCATTATGTTTGGAGGCATATCTCGTACCCCAGTAAATGTTAATAGTATAGCTACCCAGACACCTGCTGTCAGACGATCAATGTCAACTCAAACTGAGGATTCAGAATCTAATGTTATTGTATAAACTTGAATCATAAAAAATGTTGACTGACATTTCACCCAGACCAATCAATAATGTTATTGTTATGTGCAATACTACAACTACCGAAAATATTTTAGCGTTTTTAAGACAATTGAATTTACATATTGAAAAGACTATTTCATTATTATGAAGTTGACTATTTCATTATTATCATTTCTCATTTATGAAACTCAATTATGTCCC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052596	Family	Activating Molecule in BECN1-Regulated Autophagy	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22874	ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17985	AMBRA1; activating molecule in BECN1-regulated autophagy protein 1	-	Autophagy - animal	ko04140	PMID: 28812709
K17985		-	Mitophagy - animal	ko04137	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_49115-4.10 global RNA-seq network