Gene detail

Detailed information of Bpl_scaf_48970-3.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_48970-3.11	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	Bpl_scaf_48970	426858	442890	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_48970-3.11

ATGTCAGGATGTCCTGGTGACGATGCAGGATTTGAAACACAGGTGTATAACAACACAGTATGTAAAACTCCCAATCTGAACAAGCTCGGAAAGAGAAGTACTGTTTTTACCAATGCTTTTACTTCTGTCAGTAGCTGTTCACCAAGTAGATCGGTTATTTTATCAGGATTGCCTCAACATCAGAATGGAATGTATGGCCTTCACCAAGATGTCCACCATTTTATGTCTTTTGATGGAGTACAGACTCTTCCTGTTATACTCAGGAAAGCTGGCATTAGAACAGGAATAATTGGTAAAAAGCATGTTGGTCCAGAAAAGGTGTATCCTTTTGACTACGCAGAAACAGAAGAAAACAATAGTATATTACAAGTAGGAAGAAATATAACCAAGATAAAACTGTTGGTCAGGGAATTCTTAAGTCAAGATAAGTCAAGTTCCAGTCCTTTCTTTTTGTACATTGGATTCCATGATCCACATAGGTGTGGTCATACCCATCCTGAATATGGACAGTTCTGTGAAAAGTTTGGAGATGGTAGTCATGGAATGGGTGTCATACCTGACTGGACACCCATCACCTATGATCCCAATGATGTCATTGTACCATACTTTGTACAGGATACCCCAGCGGCCAGACAAGACATTGCTGCTCAATATACTACCATTAGTAGATTAGATCAGGGTATTGGATTAGTTCTGTCAGAGTTGGAGGAAGCTGGAGTTTTAGAGGATACTCTCATTCTGTATACATCTGATAATGGTATACCATTCCCTAATGGCAGAACTAATTTGTACGATTCTGGAATAGCTGAACCTTTCTTGCTGTCTTCACCACATCACAAAAATAAATGGGGAATGGAAGTAAATAACTTAGTGAGTCATGTGGATATAGTACCAACTATTTTGGACTGGTTCAGCATACCATATCCTGAATATAAACTCTTACATAACCCAGTAATTCTGACAGGGAAGTCATTATTTATGTTGCTAGGCAACAATAATATACCAACAGAGGAAGCCATTTTTACCAGCCATAATCTTCATGAAGTGACTATGTATTATCCAATGAGATCAATTCGAACAAAACGATATAAACTATTGCATAATTTAAATTATCTGATGCCATTCCAAATTGATCAGGATTTTTTCATCTCAAATACTTTTCAAGATCTTCTGTATCGGACTAGACATAATATTTCAACACACTGGTACAAGAACTTGAAACATTATTATTACAGAGAACAATGGGAATTTTATGACCTTGTGCTTGATCCCAAAGAACTAATTAATCAGTTCAGAAATGAAAAATATGAAACAGTTGTTAATCAGTTAACATTAGAATTGTATTCATGGCAGAATGTAACATCAGATGCCTGGATATGTTCTCCAAAAGGTGTTTTAGAAAACAAGGGAAGCTATGAATTTAATCCTCATTGTTTTTCAGCAGATTACGGTATTTGATGCTTCTTAGTATTCAATTTGAAGCACATTCCAGGCCCCCCTCGACCTTGCGACCGTCATTGTTATACAAATATATATCTACATATTCCATTGTAATATACAGATTTAAGCCCCATTTTTTTTTTAAACAAATGAATTCTGCATGGGATGAAATAAAAAAAAATGTTCCTAATATGTATGGTGCCCAAGCCCTTCTTGACCAAGGTTTTATGTAGATTGCATTGGAAAAATTTAGCAATGTCAAGACGCGACATTAGATATAGCATTGTATTTGGAATGAAACATCAGACGAAATGCAGATTTAGTCTGGTACAAATGAAGACCCAAGTGTTTATGGGGTCCAATCTTTTTGATCCAAAAATTGACATTCTGTAAAGAAGTTGATCAACTTTTGCCGTTTTAGGACCCATGGTCTAAAGTTTCCAAATCCTTTTGGGCTAAAGTTTAACATAGGAAGGAATAGGACAGATTTCCATAATCTTCTTTAAAGGGGAATAGAAATACAATTGTATAGGGTATGAAATAGAAATGTGATATGAAGGTTCAATTTTGTACAAACAAACACCATTGAGTCTTTTGGCTCGCCAAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00884	Sulfatase	Sulfatase	Family	Interproscan
PF16347	SGSH_C	N-sulphoglucosamine sulphohydrolase, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000917	Domain	Sulfatase, N-terminal	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR032506	Domain	N-sulphoglucosamine sulphohydrolase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43108	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005539	Molecular Function	glycosaminoglycan binding	Interproscan
GO:0006027	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0008449	Molecular Function	N-acetylglucosamine-6-sulfatase activity	Interproscan
GO:0016250	Molecular Function	N-sulfoglucosamine sulfohydrolase activity	Interproscan
GO:0030200	Biological Process	heparan sulfate proteoglycan catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01565	SGSH; N-sulfoglucosamine sulfohydrolase	EC:3.10.1.1	Glycosaminoglycan degradation	ko00531	PMID: 28812709
K01565	SGSH; N-sulfoglucosamine sulfohydrolase	EC:3.10.1.1	Lysosome	ko04142	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_48970-3.11 global RNA-seq network