| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_48590-1.4 | PRE-MRNA SPLICING FACTOR | Bpl_scaf_48590 | 58206 | 107976 | + |
| CDS | |||||
| Bpl_scaf_48590-1.4 | |||||
| Transcript |
| Bpl_scaf_48590-1.4 |
| Protein |
| Bpl_scaf_48590-1.4 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06424 | PRP1_N | PRP1 splicing factor, N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003107 | Repeat | HAT (Half-A-TPR) repeat | Interproscan |
| IPR010491 | Domain | PRP1 splicing factor, N-terminal | Interproscan |
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR045075 | Family | Pre-mRNA-splicing factor Syf1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11246 | PRE-MRNA SPLICING FACTOR | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000244 | Biological Process | spliceosomal tri-snRNP complex assembly | Interproscan |
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0046540 | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:0071013 | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12855 | PRPF6, PRP6; pre-mRNA-processing factor 6 | - | Spliceosome | ko03040 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_48590-1.4 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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