Gene detail

Detailed information of Bpl_scaf_48578-2.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_48578-2.8	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Bpl_scaf_48578	214366	271197	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_48578-2.8

ATGGGAACAGGGGGGTCGTTCTTACATAACCCAGAGGATGATGACATCCTCGGAAAAGATCTGGATGGTAGCAGTCGAGGGGTAATCAAGAGGATACCGATAGAAATAAGACCAAGAGGTAGACTGGGGTTAAAAAGTGGATCCAGTAGAAAACCTAAAGGTGGAAGTCTGAGTTCAGCATTGTCTGTGGAAATAGAGAATACAGAAGTGGAAAAGATACGGAAAGAATTTGAAATGTACAGGATCAACAAAGATAATGAGATGGCTAACATGATGAGAAAAGAACAACGACTTGTAACAGAGAACAAAAAGTTAAAAGCTGAGTTACTGGTTCTACAGAAAACATGTACCAATCTACGAGCTGAACGAGACACATCCTTGGAGGCAGAGCAACATGCATTGATTAGAGCTGCTACGTTTGAAGATGAAAGGGGAAAACTTCAGAGAAACTTTAAAATCTTTAGGGAGACCATGGAACGAGAATTACAGAATATTTTAAGAGAGAAAAGAAGATTAGAAAACAAACTAGCTAAGATCTCATTAGGTTACTCTATAGAAGATGTTGATGCTCAATCTAGACAAGAATTTGATGAAAATAGCAACACAAATCCAGGAGAATGGTGGCCAAACATGGACGGTGAACCTTCACTTAGTAGTACTATGCAGCTTCAACAGCCATCGCCACGGTTACCAGAATTTGTACATAGTATGGTAGAACCTGATGGAATATTTACAAATGTTAATAAAGAGGACTGGAGTACTGTCTTGTCTAACCTGACACAAACATTACCAAGCACACCAGAACATTCACTTAGCCCTGTCCTGAGGATATATATATCATCACCAAGGGATACACATACAGAAGTAGATATTTTGATGAAGGAATTAGGTTTGGAATCAAAGACAGACAATGAAGAAGAAGATAAAGAAGAAAGTGGCCCTGATCAGCTGTGTGGTGGGCGTGTCTGGGATGTACACTGTGACAATGAACAGTTAGAGGCTGTTAACTCAGCTAAATGTTCTAGTTGTGAGTTAGGATTTGAAAGGCATTATGAGAGATTGAATGGTCATGTGTTGTCTGCTGGCCCACTACCTCCATTACTACTGCTAGGACCACCAGGGTGTGGCCGATCTCTTTTATTAGCTAAATGGATACAGTTACAGCAGGAGAAAATTCCCAGTAGTCTGTTATTGTACCATTATGTGGGCAGAGAATCGTCAGTTAGTGCTGACCCTATTATGATGATGAGGAGATTAACAGCTCAGCTGATGCAGCAGTTGAACTCTCCTCCACCCCTGACCTCTGACCCTGTCCGTATTGTGGAAGAATTCCCAAGATGGTTGGAGAGAATTTCTTCAAGGACACCAGGTGGTGCTATAGTTGTTATAGATTCTATTGATAGATTTCAACAAGCAGAAGTGCATTTAAAATGGTTAAAGGACCCGTTACCAGTGGATACCAGGATCATTGTGTCTGCCAGTGAAGACACATGTCCTCAATCTTGGAGATCTTGGCCAACAGTTAGAGTGGAACCACTAAGTAACAAGAACGTAAAGGAACTTCTACACGCTGAACTGGCAACACTTGATGTTTCTATCAGTTCTGAGGAGGAAACGTGTATACTAACACAGTGTCGGAATCCAACAGCATGTTGTCCTCTGTATGTAATGGTGCTATCAAGACATATCTCAGGGTATACAAGATTTGATTCCAAGTCTGTGAAGCATTTAGAAAACTTACTGACGTGTACAGACTGTGTCAGTTTATACTGTAAAGTCTTAGATCTATTACGACATTCTCTAGAATCTCACGAAACAAGAGGACATTTAAAAACGATATTAAGATTTATATATGTGAGTCGTTGTGGACTACGTGAAAGTGAATTAATGGAATTAGTGCCAAATTTGTCCTTGAACTTTCTGACATTATTTACAGAAATTCTATTCCATCATCTAATTATAAAGTACCAAGGGGGACTACTCATGTTTGCACATCAACAGGTGGAGAAAGCAGTATTTGAGTATTGCTTTGGAAAAGAAGAAGCCAAGCTTATACCTCAGTATAGACAAAGTCTTATTCAGTATTTTTCAAATTCATTAGGTCCAGGAAAGACAACTTGTAGAATATCAGATGAGTTGCCATGGTTACTGAGACAAACACAAGAAAAGGAAGCATTACAGCAATGTTTACTAAATCTCTGTGTGTTTCAGCGTTTATATTCCAGAGGTAGATGTCCAGAGTTAATATCTTACTGGCAGTTTGTTGCAGCAGATAAAAATACAATGGCACAGTTATATTTCACAGCTACACGTAAAATGGAAGAATTGGTAGGACAGTATGATGGACTTATAACCTTGGAGAGAATAGCTGACCTGTATGAGTCATTAGGTCATTTCCTCAAAGATCTAGGTCAACTTAATCAGGCCGTGTCAGCTCTACAGAAAGCTCTAGAAATAAGGGAAACAACTCTTCATCCAGATCATCCCATAGTAGCTAGAACTCATCATATTCTCGCAGGACTCTATGCTCAATGGGGTAAATTCTCCACATCTGAGGACTTTTACAAACAAGCTCTGGCTCTTTATGAGAATGAATATGGAACAGATCACCCTCTGGTAGCTACAGAACTTGAAGCTCTAGCTCAGCTGTACTTAAGACAAGATCGACATGATCAAGCTGAACCATTGAAGAAAAGAGCTGTCTTCATCAGGAAGAAACAAAAATCTCCAAAAGTCTCTCCAATACTCTCTGACAATGCTAGAATACTCAATGAACTCGGTGTGCTGTACTACCTCCAGAATGACTTTAAAACTGCTGAATCTTTTTTCAAGAGAGCTTTAGAAATGAGGGAATGTACACTAGGACCAGATCATTTAGATTTAGCTCAGTCCCTGAACAATCTGGCAGCTTTATACAATGACAGGAAACAGTTCAGTAAGGCAGAACCTCTATATGAGAGAGCTCTAGAAATCAAAACTCAGTATCTGAGTACCAACCATGAAAGTGTAGCTTCCATTATAAATCATCTAGCATTACTCTATAGGAAACAGGGTAAGTTTGAGCAGGCATTCCCATTATACAAACAAGCTGTGGACATTAGAGAGAAAACATTTGGATCTTATCATCCTTCAGTGGCCACAGCACTAGTCAATTTGGCAGTATTATATTCACAGCAGAACAAATATTCTGAGGCTGAACCTCTGTATGAGAGAGCATTGAAGATTTATGAGGAAAGTCTAGGACCACAGCATCCTCGAGTGGCAGAAACTCTACGCAATCTGGCTGTAATGAAATATGAATTAAAAGATTTTGAAGCTGCAGCCAGACTTTATAGGAAGGCAACAGAAATCAAAGAAAATGAAACAACATATGGTGGTAAG

Transcript

Bpl_scaf_48578-2.8

TTTCGCTCCAACTGTCATGATACATTTAAACAAAGTTTTACCTACTGTAAGAGCTTCTAGTATATACAATGTTATATAACCCCTTTAAAATGATAAAACAAAATTGTTGTCTACTGTAGATTTAAATTCTTTCCGAATTTGTCAATGTTTGCACCAAACTTGTCAAAACTAAAACTAAAAGTCGGAACGTGCAAATGTGAAATCAGTTACCACAGCCACCGTCAAGGACAGGATCCTGTGAAAGTTGAACTGGATGATGTTACTTATTGAAATGTGATTTACACATTCATACGTATCAACATGGGAACAGGGGGGTCGTTCTTACATAACCCAGAGGATGATGACATCCTCGGAAAAGATCTGGATGGTAGCAGTCGAGGGGTAATCAAGAGGATACCGATAGAAATAAGACCAAGAGGTAGACTGGGGTTAAAAAGTGGATCCAGTAGAAAACCTAAAGGTGGAAGTCTGAGTTCAGCATTGTCTGTGGAAATAGAGAATACAGAAGTGGAAAAGATACGGAAAGAATTTGAAATGTACAGGATCAACAAAGATAATGAGATGGCTAACATGATGAGAAAAGAACAACGACTTGTAACAGAGAACAAAAAGTTAAAAGCTGAGTTACTGGTTCTACAGAAAACATGTACCAATCTACGAGCTGAACGAGACACATCCTTGGAGGCAGAGCAACATGCATTGATTAGAGCTGCTACGTTTGAAGATGAAAGGGGAAAACTTCAGAGAAACTTTAAAATCTTTAGGGAGACCATGGAACGAGAATTACAGAATATTTTAAGAGAGAAAAGAAGATTAGAAAACAAACTAGCTAAGATCTCATTAGGTTACTCTATAGAAGATGTTGATGCTCAATCTAGACAAGAATTTGATGAAAATAGCAACACAAATCCAGGAGAATGGTGGCCAAACATGGACGGTGAACCTTCACTTAGTAGTACTATGCAGCTTCAACAGCCATCGCCACGGTTACCAGAATTTGTACATAGTATGGTAGAACCTGATGGAATATTTACAAATGTTAATAAAGAGGACTGGAGTACTGTCTTGTCTAACCTGACACAAACATTACCAAGCACACCAGAACATTCACTTAGCCCTGTCCTGAGGATATATATATCATCACCAAGGGATACACATACAGAAGTAGATATTTTGATGAAGGAATTAGGTTTGGAATCAAAGACAGACAATGAAGAAGAAGATAAAGAAGAAAGTGGCCCTGATCAGCTGTGTGGTGGGCGTGTCTGGGATGTACACTGTGACAATGAACAGTTAGAGGCTGTTAACTCAGCTAAATGTTCTAGTTGTGAGTTAGGATTTGAAAGGCATTATGAGAGATTGAATGGTCATGTGTTGTCTGCTGGCCCACTACCTCCATTACTACTGCTAGGACCACCAGGGTGTGGCCGATCTCTTTTATTAGCTAAATGGATACAGTTACAGCAGGAGAAAATTCCCAGTAGTCTGTTATTGTACCATTATGTGGGCAGAGAATCGTCAGTTAGTGCTGACCCTATTATGATGATGAGGAGATTAACAGCTCAGCTGATGCAGCAGTTGAACTCTCCTCCACCCCTGACCTCTGACCCTGTCCGTATTGTGGAAGAATTCCCAAGATGGTTGGAGAGAATTTCTTCAAGGACACCAGGTGGTGCTATAGTTGTTATAGATTCTATTGATAGATTTCAACAAGCAGAAGTGCATTTAAAATGGTTAAAGGACCCGTTACCAGTGGATACCAGGATCATTGTGTCTGCCAGTGAAGACACATGTCCTCAATCTTGGAGATCTTGGCCAACAGTTAGAGTGGAACCACTAAGTAACAAGAACGTAAAGGAACTTCTACACGCTGAACTGGCAACACTTGATGTTTCTATCAGTTCTGAGGAGGAAACGTGTATACTAACACAGTGTCGGAATCCAACAGCATGTTGTCCTCTGTATGTAATGGTGCTATCAAGACATATCTCAGGGTATACAAGATTTGATTCCAAGTCTGTGAAGCATTTAGAAAACTTACTGACGTGTACAGACTGTGTCAGTTTATACTGTAAAGTCTTAGATCTATTACGACATTCTCTAGAATCTCACGAAACAAGAGGACATTTAAAAACGATATTAAGATTTATATATGTGAGTCGTTGTGGACTACGTGAAAGTGAATTAATGGAATTAGTGCCAAATTTGTCCTTGAACTTTCTGACATTATTTACAGAAATTCTATTCCATCATCTAATTATAAAGTACCAAGGGGGACTACTCATGTTTGCACATCAACAGGTGGAGAAAGCAGTATTTGAGTATTGCTTTGGAAAAGAAGAAGCCAAGCTTATACCTCAGTATAGACAAAGTCTTATTCAGTATTTTTCAAATTCATTAGGTCCAGGAAAGACAACTTGTAGAATATCAGATGAGTTGCCATGGTTACTGAGACAAACACAAGAAAAGGAAGCATTACAGCAATGTTTACTAAATCTCTGTGTGTTTCAGCGTTTATATTCCAGAGGTAGATGTCCAGAGTTAATATCTTACTGGCAGTTTGTTGCAGCAGATAAAAATACAATGGCACAGTTATATTTCACAGCTACACGTAAAATGGAAGAATTGGTAGGACAGTATGATGGACTTATAACCTTGGAGAGAATAGCTGACCTGTATGAGTCATTAGGTCATTTCCTCAAAGATCTAGGTCAACTTAATCAGGCCGTGTCAGCTCTACAGAAAGCTCTAGAAATAAGGGAAACAACTCTTCATCCAGATCATCCCATAGTAGCTAGAACTCATCATATTCTCGCAGGACTCTATGCTCAATGGGGTAAATTCTCCACATCTGAGGACTTTTACAAACAAGCTCTGGCTCTTTATGAGAATGAATATGGAACAGATCACCCTCTGGTAGCTACAGAACTTGAAGCTCTAGCTCAGCTGTACTTAAGACAAGATCGACATGATCAAGCTGAACCATTGAAGAAAAGAGCTGTCTTCATCAGGAAGAAACAAAAATCTCCAAAAGTCTCTCCAATACTCTCTGACAATGCTAGAATACTCAATGAACTCGGTGTGCTGTACTACCTCCAGAATGACTTTAAAACTGCTGAATCTTTTTTCAAGAGAGCTTTAGAAATGAGGGAATGTACACTAGGACCAGATCATTTAGATTTAGCTCAGTCCCTGAACAATCTGGCAGCTTTATACAATGACAGGAAACAGTTCAGTAAGGCAGAACCTCTATATGAGAGAGCTCTAGAAATCAAAACTCAGTATCTGAGTACCAACCATGAAAGTGTAGCTTCCATTATAAATCATCTAGCATTACTCTATAGGAAACAGGGTAAGTTTGAGCAGGCATTCCCATTATACAAACAAGCTGTGGACATTAGAGAGAAAACATTTGGATCTTATCATCCTTCAGTGGCCACAGCACTAGTCAATTTGGCAGTATTATATTCACAGCAGAACAAATATTCTGAGGCTGAACCTCTGTATGAGAGAGCATTGAAGATTTATGAGGAAAGTCTAGGACCACAGCATCCTCGAGTGGCAGAAACTCTACGCAATCTGGCTGTAATGAAATATGAATTAAAAGATTTTGAAGCTGCAGCCAGACTTTATAGGAAGGCAACAGAAATCAAAGAAAATGAAACAACATATGGTGGTAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07721	TPR_4	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011717	Repeat	Tetratricopeptide TPR-4	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001822	Biological Process	kidney development	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007368	Biological Process	determination of left/right symmetry	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0060026	Biological Process	convergent extension	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19360	NPHP3; nephrocystin-3	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_48578-2.8 global RNA-seq network