Detailed information of Bpl_scaf_48337-3.3 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_48337-3.3CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5Bpl_scaf_48337294237319646-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01472PUAPUA domainFamilyInterproscan
PF01509TruB_NTruB family pseudouridylate synthase (N terminal domain)FamilyInterproscan
PF08068DKCLDDKCLD (NUC011) domainDomainInterproscan
PF16198TruB_C_2tRNA pseudouridylate synthase B C-terminal domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002478DomainPUA domainInterproscan
IPR002501DomainPseudouridine synthase II, N-terminalInterproscan
IPR004521DomainUncharacterised domain CHP00451Interproscan
IPR004802FamilytRNA pseudouridine synthase B familyInterproscan
IPR012960DomainDyskerin-likeInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR032819DomaintRNA pseudouridylate synthase B, C-terminalInterproscan
IPR036974Homologous_superfamilyPUA domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23127CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000495Biological Processbox H/ACA sno(s)RNA 3'-end processingInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0031118Biological ProcessrRNA pseudouridine synthesisInterproscan
GO:0031120Biological ProcesssnRNA pseudouridine synthesisInterproscan
GO:0031429Cellular Componentbox H/ACA snoRNP complexInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11131DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4EC:5.4.99.-
Ribosome biogenesis in eukaryotes ko03008PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_48337-3.3 global RNA-seq network
TOP