| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_48229-0.3 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | Bpl_scaf_48229 | 55701 | 78043 | + |
| CDS | |||||
| Bpl_scaf_48229-0.3 | |||||
| Transcript |
| Bpl_scaf_48229-0.3 |
| Protein |
| Bpl_scaf_48229-0.3 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01857 | RB_B | Retinoblastoma-associated protein B domain | Domain | Interproscan |
| PF01858 | RB_A | Retinoblastoma-associated protein A domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002719 | Domain | Retinoblastoma-associated protein, B-box | Interproscan |
| IPR002720 | Domain | Retinoblastoma-associated protein, A-box | Interproscan |
| IPR015030 | Domain | Retinoblastoma-associated protein, C-terminal | Interproscan |
| IPR028309 | Family | Retinoblastoma protein family | Interproscan |
| IPR036915 | Homologous_superfamily | Cyclin-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13742 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000785 | Cellular Component | chromatin | Interproscan |
| GO:0000977 | Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005667 | Cellular Component | transcription regulator complex | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0030154 | Biological Process | cell differentiation | Interproscan |
| GO:0051726 | Biological Process | regulation of cell cycle | Interproscan |
| GO:2000134 | Biological Process | negative regulation of G1/S transition of mitotic cell cycle | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K04681 | RBL1; retinoblastoma-like protein 1 | - | TGF-beta signaling pathway | ko04350 | PMID: 28812709 |
| Cell cycle | ko04110 | PMID: 28812709 | |||
| Cellular senescence | ko04218 | PMID: 28812709 | |||
| Viral carcinogenesis | ko05203 | PMID: 28812709 | |||
| Human papillomavirus infection | ko05165 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_48229-0.3 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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