| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_48161-1.16 | CRUMBS FAMILY MEMBER | Bpl_scaf_48161 | 48175 | 87304 | + |
| CDS | |||||
| Bpl_scaf_48161-1.16 | |||||
| Transcript |
| Bpl_scaf_48161-1.16 |
| Protein |
| Bpl_scaf_48161-1.16 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00008 | EGF | EGF-like domain | Domain | Interproscan |
| PF00023 | Ank | Ankyrin repeat | Repeat | Interproscan |
| PF00066 | Notch | LNR domain | Domain | Interproscan |
| PF06816 | NOD | NOTCH protein | Family | Interproscan |
| PF07645 | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| PF12661 | hEGF | Human growth factor-like EGF | Domain | Interproscan |
| PF13637 | Ank_4 | Ankyrin repeats (many copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000152 | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR000800 | Domain | Notch domain | Interproscan |
| IPR001881 | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR002110 | Repeat | Ankyrin repeat | Interproscan |
| IPR008297 | Family | Notch | Interproscan |
| IPR009030 | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR010660 | Domain | Notch, NOD domain | Interproscan |
| IPR013032 | Conserved_site | EGF-like, conserved site | Interproscan |
| IPR018097 | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR024600 | Domain | Notch, C-terminal | Interproscan |
| IPR035993 | Homologous_superfamily | Notch-like domain superfamily | Interproscan |
| IPR036770 | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR049883 | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| IPR051022 | Family | Notch Signaling and Cell Fate Determination | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24049 | CRUMBS FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0007219 | Biological Process | Notch signaling pathway | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0030154 | Biological Process | cell differentiation | Interproscan |
| GO:0050793 | Biological Process | regulation of developmental process | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K02599 | NOTCH1; Notch 1 | - | Notch signaling pathway | ko04330 | PMID: 28812709 |
| Th1 and Th2 cell differentiation | ko04658 | PMID: 28812709 | |||
| Thyroid hormone signaling pathway | ko04919 | PMID: 28812709 | |||
| Dorso-ventral axis formation | ko04320 | PMID: 28812709 | |||
| MicroRNAs in cancer | ko05206 | PMID: 28812709 | |||
| Breast cancer | ko05224 | PMID: 28812709 | |||
| Prion diseases | ko05020 | PMID: 28812709 | |||
| Human papillomavirus infection | ko05165 | PMID: 28812709 | |||
| Endocrine resistance | ko01522 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_48161-1.16 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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