Gene detail

Detailed information of Bpl_scaf_48036-0.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_48036-0.8	CYCLINS	Bpl_scaf_48036	105854	111860	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_48036-0.8

CTAATTATTTCATTATTTTGTAGATTCAGTGCAGTCGACAGTCTAATCCGATTGTCAATTACAAAATCTCCCAAGGTGTTGTGATACGCATGCGTATTAACACTGACAAATGCTACATAGCTGAGTAAATGAATAGAGCATTCAGCAGTGTTACCGGGGGTGGTATATAATCACAGCTCCCAAGACTATCAGATTGTTGGCCGTTTTGAGCACAGAGGAGCATATAAGAGAAAGGAACACAACAACTCATTCATTCTTTGTTGGTAGTTCTTAGATATCGGTCAGTGCAGCATTCGGCCAAACTTGTGTCACTTGTTCATCCGGAGGATAATTATTTATATTTACTTATTATTTATTTGTGTGTTTTGTGTTCGTCATTAATTACCCGAACTTTAATAACAATCAGCAATAACAATGGATTTGATGTGTTGTGAAGCTGAGTCTTTAAAAAGAGCATACGAAGATCCTGTGCTTTTGAAAGACGATCGAGTCTTGCATAATTTGCTTGCTACAGAGGACAAATACCAACCGTCCGCAAGTTATTTCAAATGTGTTCAAACAGACGTGAAACCTTACATGAGGAAAATGGTAGCAGAATGGATGCTTGAGGTTTGTGAAGAACAGCAATGTGAAGAAGAAGTATTTCCTTTAGCAATGAATTATATAGATAGATTTATGTCTGTAGTCGATATTCCAAGAACAAGGCTGCAACTTTTGGGGGCAGTTTCAATGTTCCTAGCATCAAAACTCAAAGAAACAAACCCTTTGTCAGCAGAAAAATTGGTTGTGTATACAGATAGTTCAATTACATTGGAAGACTTGATGACAATGGAATTATTAGTTTTGAACAAATTGAAATGGGACTTGTCAGCCATAACGCCACACGATTTTTTAGAGCAAATTTTGAGTCGGATTCCAATGGAAACGGACCTTCGGAATTCGATAAAAAGACATGCACAGATATTTATCGCATTATGCGCAAAAGATTGTAAGTTTATGATGTATCCTCCTTCAATGATTGCCGCCGGAAGTCTTGGAGCTGCAGCACACGGATTATTAAAATCTTCCAGTCACAAACTATTGGGAAACCTTCACCAAATCCTGGGCATTGATATTGACTGTTTACGATCGTGCCAAGAACAGATTGAACAAACTCTGGCATCAAATTTATCGAATGTTGATAGTAATATGTCCGAAAATACATCCTCAAAAACAGACTTTCATCCAAATCGTGATCACATAGAAGGCCAACCAACCACACCAACAGATGTTCAAGATATTGTTTTCTAAAAATTCGGACTTACAAAAATGTATTCATCCAAACGCTGCCAAGAATTTCTGCTGCATTCAAAGTTTTTTTATGAGAGATTTTTATGTATAATGTTGTGGATGCCCTTTGCCATATTCGACAAAGATCGCTGCTGTTCTGTTCATAGCAGATTCAGGGACGATATACTGGCTGAAATTAGAGTGAATGTGTTCAAAAAAAACTTTATAAACTTTCGGTTTCAGCTGGTGAATTGTCAACTTTCTCAGATATGTAGGAAAGGGTGCATTGTTAATGTTTTTTTTTACTGTTAATGCTGTTTTTTTACTTGTTAAAACCATTTATTATGTTATTATATGTCACCATAAATTTGTCACAATCCACTTTAATGTTCAATATGCATTCTCATCATTGACACAAAAAAAATCATTATTCATTAAAAAACAAAAATGGTGCTGATTTTTTCCAGATATGCACATAAATACATATTTTTTCACATGATTTGTAATGATTGATGTTAAGTTTTATTCTAAGGTTAAATAGTGCTATGAAACTTTTGGTTTGAATTTGGAATAAAACCTTAATGCATAGTCATTGCTGGATTGTGGTAAAAAGAGACAAAGGGGTTGTCTCCCCCTAGTAGAAAAGGACTTGATGAAATATGGATAGTTTAGAGTAGAAGTGACCATTATTTATTATTCATTTTGGTGTGCTTTAGTCACAAAATACTAATGTGTTCAAAAATCATATATTTAAGTTGAGGAATTTCAACATAGTTGAAATGATATTTTTTTATTTATTTATTCTTTCTAAGAACAAAATGTCTCTGAAATTAATTCTCAAAACTTTTTATCAGTGCCATCGAATTTAGTTCATAAATTTGCTCCTAAGCATTTTTACTGGGGGTACCTTATTTTTTTTTTTTTTTTTTTCCATCAAAAAATGTACTTTCATATATCTTGAACAAAAACTGATGAAAAGTGAGGACCAATATTGTAATGTAGTAGAATGATCAAAATGGTAGATATTTAATACCTCTACCTCCGTGTATACACCAGAGAGAATCTCTGGAATATGTCAGTCTACCTCTTAGATTTCAGAGATGAATCCTTTCTAGGATACTTAATTTATTTGCATGTGATAAACAAGTGTAAAAATTTGTATTTTTTTATTTGTCTTAATAACAAACTTATGTTTTATTTTGTAAACTTTCTGAACAAATTGATGTCAGACATTGCCATATTTTGTGATTAGGCCAAAATTAAAATTACATGCGTTTCCGTTAAACCCTACCGACCATAATTTATAGTGCCTACCCCTAAAGTTTTTGGTGGCCATTTTTGAACAAGCACTATTCAAGTCAGAATGTGTCCCCTGTAGAAACGAGCTAAAAGAAATTAAAATAAAATCTTTTTCCTACCTACTGACCCTTATTTTAGACCATATTAGCAGAAACACATGTATTTTTTTCTTGGCCTTATTGATAGGGCAGTTTGGGTATTGTTACATGTTACCCATAGGCATGTCACAAATTGGGCATATTCTGATATTTGACACATTTAGGGCAGTATTAGGAAGTAGAGTAAAGGCAATGGGAGAAGTCTTTCAAAAAGATAAATTATGATCTGTGATAATGTATACCAAGGACTTTGTGAATCATGTGTAAACAAGGTGAATGAAATTGTTATTTAATAAAGGAGAAAATGAAACATGTGTCCAGCGTATTTAATAAAGGAGAAAATGAAATATGCCTCCAGCGTGGCTTATTTATGGAAATAGTGACTTGTTAGTTTAAACAATAATAGCTCCAGTCCTAACAAATCAGAATTTTGTGTTTCTGTTCTTCGTATCATTGAGCAAAGTAAATTTAAGTCTTGAATCTCTCTTTATTCCTGTAGAGGAAATGATTTCAAGAAATTTATTTCAGAAAATCTGCTTTTAATTTTATTGTTCTTGAAACACTTAACTAATTTGTTGTGGACTGAGTGAAATAAGCATTAAATGAGTTATTTATATTTTTTCGTGACTAGATCAACAAGATCTGGTCTATTAAATTTTCGTTAAAGTCACTATTTTATGCAAAATTGTACAGAGATACTGGTATGAAAGAGAATGTGTAGTTCTTATGTACTCATTAGGAATGCTTGTCCAGTATTGTACATAGACAAGACAGAATGAGGGATGGTTTAAGATGTTGTGAGTGTTGGGTGAGTGGGTTGTCACGGGGTAGAAGATTGAGGAATGGTCTTGTACAGTGGAGGTGTCACGGGTTAGAGATGTATGTTGTTGTTTCTGCCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan
PF02984	Cyclin_C	Cyclin, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004367	Domain	Cyclin, C-terminal domain	Interproscan
IPR006671	Domain	Cyclin, N-terminal	Interproscan
IPR013763	Domain	Cyclin-like domain	Interproscan
IPR036915	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR039361	Family	Cyclin	Interproscan
IPR048258	Conserved_site	Cyclins, cyclin-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10177	CYCLINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000079	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0000307	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016538	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0044772	Biological Process	mitotic cell cycle phase transition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10151	CCND2; G1/S-specific cyclin-D2	-	Wnt signaling pathway	ko04310	PMID: 28812709
			Hedgehog signaling pathway	ko04340	PMID: 28812709
			Hippo signaling pathway	ko04390	PMID: 28812709
			Jak-STAT signaling pathway	ko04630	PMID: 28812709
			FoxO signaling pathway	ko04068	PMID: 28812709
			PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			Cell cycle	ko04110	PMID: 28812709
			p53 signaling pathway	ko04115	PMID: 28812709
			Cellular senescence	ko04218	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Prolactin signaling pathway	ko04917	PMID: 28812709
			Transcriptional misregulation in cancers	ko05202	PMID: 28812709
			MicroRNAs in cancer	ko05206	PMID: 28812709
			Viral carcinogenesis	ko05203	PMID: 28812709
			HTLV-I infection	ko05166	PMID: 28812709
			Measles	ko05162	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_48036-0.8 global RNA-seq network