Gene detail

Detailed information of Bpl_scaf_47993-0.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_47993-0.1	DESMOGLEIN FAMILY MEMBER	Bpl_scaf_47993	24966	28495	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_47993-0.1

TTGAATAGTGAGATCATAATAGTCAATGCTTCTGATTCTGACATTGGTCTTTCTCACGGAATCGTTACTTATACCATTGTTTCAGGAGATGGAAGTGGACAATTTTCTATTACTACATTAGGAAAATTAAAACCCTCGAGGGTCCTTGACAGAGAAGCTACCGATTTCTATAATTTAACTGTTTTAGCATATGATAGTAATTTGGGGTCAGTTGATTCAATGACGGCAACTACCTATGTTGCCATCACTGTTTCTGATATCAACGATAATTATCCGAAATTTTCTGAAAATTCTTATTCAGTATCATTGTATGAAAGTACTGTTATCGGGGCTACAGTCCAGGTTTTAAGTGCCACAGATGACGATATAAATGAAAATGGACAGAATGGTTTTTCGTATTCAATAATGTCCGGCAATACCGGAAACACCTTCAATATAACAGAGAACAAAATTATTCTGGCAATAAATATTGACAGAGAGACCGCTTCGTTTTATAAATTACAACTACAAGTTCAAGATAATGGAACAACTCCATTAGCAGACAATGCATACTTGCACGTTGAAGTTTTGGCGGTAAATGAGCATACTCCAAAATATACAAATGACAGCAATAATATAACCGTGAGTGAGACAGTTGCCATAGGAACAATATTGTATACATTCTCAGCTACTGATGGGGACACAGGTGACTATGGAACATTGAGATATTATATATCTGGTAATGTTACCTATAGTGAATTTCTGCTTGATGAATATACAGGTCAGCTGACCGTTTGGTCTGCATTAGATTATGACGTAGCGCCAACAGAATATAACATAACCGTCCAAGCCATCGATAAAGGTTACAATGCTTCGGATTCATTATCTGACTATATGTGGCTTTATATTGTTTTAACTGATGAAAATGATCACACACCAACCTTTTCCCAAAATGTGTATACATTTACAATCGATGAAAACGTCAATTCTGACTACACCGTGGGTGCTGTTGTAGCTAGTGATGGTGATTCTGGTAACAACGGGAACGTAACATATTCAGTAGTTAGTGGGGATGGTTCGACAACATTTAGTGTCAATGAAACCACTGGTGAAGTAATAACACTGAGCACCATTGATTACGAACTCAAAACATTGTACTCAGTAGTTATTGAGGCCAAAGATAACGGTACAAACAGTCTGTCCTCGAGATGTTTAGTAAAAGTTATAATTAATGATCTAAATGACAATTCACCAACTTTCCAACCTGATGACTTTGCCATTAACATATTTGAGAATATTACCGTGGGGACATCAATAACGTCTATGTATGCTGTAGATGCCGACTCGTCCGTTTCAAACAATAATGTATTTACATATCTCACAGACTCGGACACTTTTGCCATCGACTCTAGTACGGGTATCATAACCACAACATCCACTCTAGACAGGGAGATTATTTCAAGCTATATCCTTAGCATAACAGCCTTAGATCAAGGAACTCCAGCTATGACGGGAACAGCAACTGTAACTATCCTTATAGATGACGTAAACGACAATGATCCAGTTATATATGGGACTTACCAAGTATCAGTAGATGAAAATGCTGGTATAAACACCGTTGTTACTACTGTTAATGCCACAGACGCCGACAGTGATGAAAATGGCCAATTAACATTTTCAATTGTAAGCGGAAATACGGATAGTGACTTCAAAATTGATGCAAGTATGGGATTAATACAAATTGCAAATTCTCTAGACAGAGAGAGAACGTCATCTTATGTCCTTGGTGTTGACATAATAGATGGTGGAGAACCAGTGAGAACAACTTCTGTGAATGTAACTATATCTATTTCTGATATCAATGACAATGGACCTGTATTTACATCCGTAGCGTTTTCATTTAGTGTTGCTGAAGATGTTTCAGTCGAATATGATGTTGGTAATGTAACGGCAACAGATGCAGATACGGGAAATAATGGAGATATATCTTATTCCATACCTATTTTCTGGTTGGGTATAAATTCTCACTTTAGTATAAACGAATCTACTGGTATAATTTCAACCGCTGGTACTTTAGATCGGGAAACGTATGAAACATACTACATTCTGTGTAGAATATCAGACAATGGATCTCCGATGTTTACAAATGCAGTAAACATAACAATCATTGCTACGGATGTTAATGATAACGATCCTGTTTTCAATGCCTCGTCATATTCAGCTTCCTTTCCTGAAAACGAAGCTACTGGTACTACAATCCTGCCTGTATTTGTTACAGACATTGACAGTGGAGTAAACCAAGATGTCACGTTGACCATAGATACAACAAATATAGAGGGTCAGACCGCCAACACGTACATAGCTTTAAATTCAACGTTAATGACATTATCTGTCAAACAAAATATTGATCGAGAAATGACACCAATCTTTCAGTTTACATTGGTAGCAACTGATGGTGGTTCTCCTCCAAGATCATCGACTGTCAGTATCAGTTTAATCGTTGAAGATTTAAACGACAACAGTCCATCGTTTTCTTCAAGTTTTTATAATTTCGAGATTCCATACAACGACGATTGTCATGTTACAGTGGGTGTAGTAGCAGCCTCTGACAGTGATTATAATGATACCGTTTTGTACTTTATAACAACAATAGAACATTTGAACATATTCAGTTTA

Transcript

Bpl_scaf_47993-0.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR050971	Family	Cadherin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24025	DESMOGLEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16669	FAT4; protocadherin Fat 4	-	Hippo signaling pathway -fly	ko04391	PMID: 28812709
K16669	FAT4; protocadherin Fat 4	-	Hippo signaling pathway - multiple species	ko04392	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_47993-0.1 global RNA-seq network