Gene detail

Detailed information of Bpl_scaf_47568-3.21 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_47568-3.21	OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL	Bpl_scaf_47568	387994	416401	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_47568-3.21

ATTTCAGATAATTAATTAATTATTTATTTTTCAGAATGGAAGTAACTCTAAGCCCAGTATACAGTTTCAAGGCAGTCAGGGGGTCATTAAAATTCCAAAGAAATCCTCTGATGATTGTAAAGCATTCCAGTTTACTTTGACTTCTTTGTCAGAACCCAATGGCAGTGTGGATTGTGTACAGCAACCCCCACCTGTGCATGGTAATCACATGATATTCCAAGGCTCCATGACCAATAAAATGACTGTTGTTGCCACTAGTGATGTTTTCCAACAAACCAGAGAACAAATGAAAAGTGCTCAAGAAGAATGGGGTAAAGTGAGAACCCAGGAAATCAAGCCTAGTGGACCAAATATTAGTAAAAGAATTAAAAATATCATTAAAAATCCAAAACGAGAAATAGAAACTTCACAACCAAAACCTTCCCCGTCACTAAGTGCAATAAACCTTAATAAACCTAAGACATCGGTGGTGTCTCCACTATCTGTGCCTCGTCATCCACCTTCCACAAACCATGTCACCTCGACAACAACGCTTCATCGTAATAATGCTGTGACGTCTTCTGTTGCCATGACAGCAACGCTAAATCGTAATAATGCTGTGACGTCTTCCAAGCCAACTTCTACAAAGCCTGCTTCTACAGTTAATGCCGCTGTGATGCAAAAACCTTTCAGGGAAAGACTGTTACATTTATTAGCTGTGAGACCATTTAAAAAACCAGAACTGCTTGTTAGATTAAAAAGAGATGGAATTAGAGACAAAGATAAAGATACATTTGGTACAACTTTACAGAATGTCGCTACGTTAAATCCACGGGATAACAAGTATTACCTCTCCAAACATTTATATTCTGAAGTATCCTTAGATTGGCCATTCTATAATGATAGTGACAAGGACATTGTCAAAAGCAAATTGCAGAATATCTCCCCTGCTGCTTCCCCAGCCAGTCATCCTTCACCTGACAGTCCTACTAGCTCAGTACCCCAGAAAAGACCAAATGAGACCTCCACAGAACATCCCCCTAGTAAGAAACAGAAGAGGATTTCACACTATGATAAACAAATTAAAAAGGAGAATAAACCTTGTATGGATAGCATCAAACAGGAAGTGACATCATCTGTCAATGGGCATGACAGGAAGCATACCAAAGAAAACATTGATGATTCTTCCAATGTTGACTCTACAACCAATGATTCTCTTGACTTTGTGAACAAATACCAACATATATCTAGCTTTGATCAGAGGAACATGTATAAGCAGGAGTTTAATTTAGAGTATGAAGAATATCGTAATCTTCATAAAAATGTGGAAAAAGTTACTCAGAAATTTGCTAACCTAGAAGTCAAAATGAGACAGGCACAGCAAGGAACTGAAGAATTTGAGAAATTGAAGGATTTAATCCGAACAGAATACAAAATTCAGAAAGAAGATATCAAGTATATAGAACAGAAGAAAAGATTTGAATACTTACATAAAAAGCTGGGCTTCATCAAAGAGTTGATTCTACAGTTTGACCGATCTCAAGCAGTTGTGGATTCATAGCGTTAGTTCCACCTTAACGGTGGATTTTTGTTGACAACCCAATTGTTACCATAGTAACAATGTTTCTGGCCAATGGATCTGGAGATTTTAAGTCATGTGATGTATGAGTTGCTTCATGTAAGCTATGTGATTGTATGTATGTATAAGCATGTGAGAAATTGTATAAATGTGATTGGTATATTCAAGTCTTAAATTAAACACCTAAGGTAAATATTGTCCTCAATAAAATATTATCTGTAAGTATTAAAATGTATATCAAAGATACTATTAGAATGTTTTTTTTTATGTAATAGAATTTGTGATTGAGTAAATGAACTGTCTTATTGGATGCCATAAGCTATAGGAAGGGAGATAATTCATGTTAATTTAAATAAGATTGTTTAACCTTTGATTAATAGTGATTAAACATTTAAATGCAAATATGTCATTTATTTTTAGAAATGTATTTGTTTATCATGTAATTTCGTTTTAAAAGTTTCTTTTTTTTCTTTTTTGCTTGAAATTTCAAGTTTGTCATGAAATCGACTGGTGGATAATTCTAAATGTGTAGATGTTTTCCTTTTCAAATAAAGTAGCATGGTGGCAAACAGTTAAACACTACGTTTTTGATTGACTTTTTGATTGACAAACGTAAAAATAGGGAGAGAATTATTTTTTTTGAAGATTACAGATAAAATGATAAACAATGTGTTATGTAGGTCACTAGGTCATTGACCTTAAAACAATCTTATTTTAGTTTAAAAATATGAATAGATCAATGGTATGATGAAATGTGCACAGAGTTGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07303	Occludin_ELL	Occludin homology domain	Domain	Interproscan
PF10390	ELL	RNA polymerase II elongation factor ELL	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010844	Domain	Occludin homology domain	Interproscan
IPR019464	Domain	RNA polymerase II elongation factor ELL, N-terminal	Interproscan
IPR031176	Family	ELL/occludin family	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR042065	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23288	OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000987	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023	Cellular Component	transcription elongation factor complex	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0042795	Biological Process	snRNA transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15183	ELL; RNA polymerase II elongation factor ELL	-	Viral life cycle - HIV-1	ko03250	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_47568-3.21 global RNA-seq network