Gene detail

Detailed information of Bpl_scaf_47430-9.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_47430-9.8	AAA DOMAIN-CONTAINING	Bpl_scaf_47430	1065972	1088398	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_47430-9.8

AGGAGCTATTATGATGGAGAAACCCAATGTTAAATGGGAAGATGTGGCAGGGTTATTTGCTGCCAAAGAAGCATTAAAAGAAGCTGTGATTTTACCTGTCAAATTCCCTCATTTGTTTTCAGGAAAAAGACGGCCATGGCAGGGAATACTGCTGTATGGACCTCCAGGTACAGGGAAGTCCTACCTCGCCAAAGCTGTAGCAACAGAAGCTGACAATTCTACTTTCTTTTCTGTATCATCAGCTGATTTAGTTTCTAAATGGTTGGGAGAAAGTGAAAAATTAGTCAAGACGTTATTTTCCACTGCAAGAGATAATAAACCAAGTATAATATTTATAGATGAAGTAGACGCTTTGTGTGGATCTCGTAGTGAAAATGAATCCGAGTCAGCCAGAAGAATTAAAACAGAATTCCTAGTCCAGATGCAGGGGGTGGGGGTAGACAATAAAGGGGTATTAGTATTAGGGGCTACAAATATACCATGGGTGTTAGACTCTGCAATCAGAAGAAGATTTGAGAAGAGAATCTACATCTCATTACCAGAGGCTCCTGCCCGAACTGAAATGTTTAAGTTACATTTAGGTAACACGCCACACACAATAAATGATGACGACTTCAAAGAACTTGGTAAAAAAACAGATGGATTTTCTGGAGCTGATATTTCAATCGTTGTACGAGATGCCTTGATGCAACCAGTAAGAAAAGTTCAGACAGCAACACATTTTAGAAGGGTAGGGGGTCCAAGTAGAAAAGACCAAGATGTCATTGTAGATGACTTATTGACCCCCTGTTCCCCTGGTGCTCCAGGAGCAATGGAAATGAACTGGATGGATGTACCAGGTGACAAATTATTAGAACCTATTGTATCATTTAATGACATGCTTGCATCCTTAGCTAACAGTAAACCTACAGTTAATGAAGCTGACTTGAAGAAACTGGAAGACTTTACGAAAGATTTCGGTTCAGAAGGATAAATATGTGATAACTTGTTATTATAAACTTATTTTATTTGACAAATTTTTGTCACTATATCATGGTAAATATTAAGTTTCGCATGGTAAGACTTACTCAATAGATGACTGATATAATAAAACAAAAACTGGAAAGTTGAATGTTAAGAAATTTCTTGAATCTTATTGAACAAACATATAATGTATTGAAAAGAGGGGGGGGGTCGGTTTGATAATGAATAGACATTTAATTTAAATATGATTGCATGTGATCGACAAATCTTATCATTTCATGAATAATCAATGGTACAAAGATTTTCACGATTCATTGCTAATACTAATATAGCCAAAAAGTTTATATCCTATTATTTTAGTCCACAAGGTTTCAAATTCAGCAAAATTAATAAAGTTTTAAATTCATAAAAAATATATAATCTATTTGTATGTTATTGTGTGCAGAATTTGTTTATTTTCTCTTTCATTTAATGATTGTTTTTAACACTATGTATTTGGTGAAATTTACACATGTAGACTGAAAGGTGAAACTGGTCTTCAATAATTTGATGTTATTTTTTTTTTCTTGTTACTTCAAAACTTTTTTGGGGGAAATCCTATGCTTTTTTTTATTTTTATTTCTATTCACTTATTTGTGGGAAATCCAAAAGACCTATTTTTTAAATTTGTCTTTCAAAATCTTGCTCAAATTATTTTTTATTTCTGTGATTGAAATGGGAATGAATTGTTAGGTTTTTATAGATAATGAAGAATTATGTACATTTAAGGTGTATAGGATATGTATCTTTGTGTCAATGAAAATTTGAAATAAAATTAGACTTAAACAGGAAATTGAAATAAATATGTTTCATAAACTTAAAATTATAGACCAGTGATTTTTCACATTAAATTACAATCAAAATACTTGTTAAATATATCATTGTCAAATCAATTCATGTGATCATGTGTACCTACTTAAATTTGACACTTGATCTTTAGATTCTGAAAATGAATCTAGAACACTGACATGGTTATTCCTCAGTATCACCTACTATAGTATAGTATGATTATATTGAAAACATTGTTTTATTATTATTTATTTCAAGTACAAATTGTGATCTTCTATTATCTTCTCTACAGGGGAGGGTCAATGTAGTCGAGATCGTATGTAAGTCTACCTAAGCAATCAATGTCTATCTTTAGTGGAGTTGTTGAGAGTTTGATTTCCACTTGTTGCAAATTTAAAGTGTGCTGATTACAAGTTTATGAATATAAGATTGTCTGACAGTTACATGTAGCAGGTCGATCGAATTCTCTGAATACTACGATTTCCTCTTAAAAAAAAATGGCAGCCACAATATAGCTTAAAATTGTTAAAGAAGGGTTAAATACACATTATCTAGCATAGTCATATATAACCTTCAGCATAATAAAAAAAAATATATGATATACATATGAGTTTAAATGATTTATTGAACAATGTATTGAAAGTTGAGTTAAACACCAATCAATCATTCGATATCTATTCACTGTGAAATAAACAATATAATTGACACACATAAAGGATTTAACTGGAGGAGAATGACTTGTCTATGTACATATATGTACATTTCAAATATATGAAGAATATATCACATATCTAAAATATAGATGTAGGGTTGTTAATACCATTATAAATTTCACTTTTTAAAATAATATACAAACTAAAGTTTGAGAGAGTGGTATTTGTAGTCATGTTTTTGTCCTTTTCAATTTTTAAAAGAAAATAATGGCATGTGTGATGTAATACAAAATTTGTGTATGGTAGGGAGGTTGAAAAACTACCTCCTGACATGCCTGTAAAATTAAGTCTGATACAAATGCTGGTTATTTTGTTCACATGGGATTTTTGTACATTTTCCCCCGACTGTAATAATAGAAATTTCATTTTCATTAAAACTTTTAATACACAAAATTGGTATAATGTATTGAAATATAAGTAGTAATTTCAGTCACACCATGATTGTGTCACACTATTGTATGTGAATAAGTGTGATAAAGGCACAGGATCGTGTCGTACGATTACTATATTTGGATGAATGTGACGCAGACATGTAATCTGTAAATACCATGATATAATTTGAAAAATAAAATGAACGATTTGTTTCAGCATATTATGTCTACCATTGTATTTGAATGAATTTCAATATAGTACAACAGTGGTTAGGGTTGTAGTGTTAAAGCCACTTCCAACAATATTTCAGCTATATCATGGCGGTCAGTTTTATTGGTGGAGGAAACCAGAGAACTCGGAGAAAACCACCAAGTCAATGACATACTTGATCACATAATGTTGTATCAAGTACACCTTGCCATGAACGGATTTGAACTCAACATTAGTGGTGATAGGCACTGATTGCACAGGTAGTTGTAAATCCAACTACCATAGGATCACGATCTCTGTGGAGAGGAAATAAGTAGTACAGCTAATGATGGATATTGTATATTGTCTTGCACCAAACCCTTGCATTAATGTGATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12196	VPS4; vacuolar protein-sorting-associated protein 4	-	Endocytosis	ko04144	PMID: 28812709
K12196	VPS4; vacuolar protein-sorting-associated protein 4	-	Necroptosis	ko04217	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_47430-9.8 global RNA-seq network