| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_47374-1.9 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED | Bpl_scaf_47374 | 199608 | 214631 | + |
| CDS | |||||
| Bpl_scaf_47374-1.9 | |||||
| Transcript |
| Bpl_scaf_47374-1.9 |
| Protein |
| Bpl_scaf_47374-1.9 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06003 | SMN_Tudor | Survival motor neuron protein (SMN), Tudor domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002999 | Domain | Tudor domain | Interproscan |
| IPR010304 | Domain | Survival motor neuron, Tudor domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13681 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000381 | Biological Process | regulation of alternative mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006397 | Biological Process | mRNA processing | Interproscan |
| GO:0071011 | Cellular Component | precatalytic spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12839 | SMNDC1, SPF30; survival of motor neuron-related-splicing factor 30 | - | Spliceosome | ko03040 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_47374-1.9 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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