Detailed information of Bpl_scaf_47325-1.19 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_47325-1.19SNF2/RAD54 HELICASE FAMILYBpl_scaf_4732545890101836-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00439BromodomainBromodomainDomainInterproscan
PF07529HSAHSA domainFamilyInterproscan
PF07533BRKBRK domainDomainInterproscan
PF14619SnACSnf2-ATP coupling, chromatin remodelling complexDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000330DomainSNF2, N-terminalInterproscan
IPR001487DomainBromodomainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR006576DomainBRK domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR014012DomainHelicase/SANT-associated domainInterproscan
IPR018359Conserved_siteBromodomain, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR029295DomainSnf2, ATP coupling domainInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR037259Homologous_superfamilyBRK domain superfamilyInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10799SNF2/RAD54 HELICASE FAMILYInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008094Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11647SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4EC:5.6.2.-
ATP-dependent chromatin remodelingko03082PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_47325-1.19 global RNA-seq network
TOP