Gene detail

Detailed information of Bpl_scaf_46551-1.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_46551-1.2	VILLIN	Bpl_scaf_46551	88738	106579	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_46551-1.2

TGAAAGTGTGATTAATAAAGTGTGTACGTAGGTTTACTGTATATACCAGGGAAATAAAAGTGTGTAGGATTACTGTACTGTACATGTGTATGTCCAGTGTATAGACTACCAGAGGGAAGTGATCACTTAAATATAATAGTTTATCCTAGTATCTATTTATTACAGAGAAATCATTTCTTGTGTCTGCTACTGAGAAATATCTTTAGACAACATGACAGGTTTAATCAAACAGAAACAATATGACTGGAAAGACTCAAACTTGGCACTATTTGGATCAGACTTGGAAAAAAATGTTAAAAAGGAATCTGCTGCTACTGAAAAAGCATGGAAGAATGCTGGAGGCAAAGTAGGCTTACAGATCTGGAGAATTGTGAAATTTCAAGTTACAGATTGGCCTAAAGAAGAATATGGAAGGTTCTACAATGGAGACTCGTACATCATATTAAATACTTATAAAGAAGATGACACTGAAGAATTATTATATGATGTTCACTTTTGGATTGGTCAATACAGTACACAGGATGAGTACGGAACTGCAGCCTACAAGACAGTAGAATTGGACACATTCCTGAATGATGCACCAATTCAACATCGTGAAGTACAGGGACATGAATCTGATCTGTTCAAGTCCTATTTTGATAATATTACAATTTTGAAAGGAGGTGCTGACACTGGTTTTAGACATGTGAAACCTGAAGAATATACTCCACGACTCTTCCATTTCTGTGGTACTAGGAAACATGTTGAAGTCAGGGAGGTACCAAGAAATAAGAGTCGACTTGATTCAGGTGATGTGTTCATCTTGGATCTAGGTCTTCAGATATACCAATGGAATGGATCAGGTTCAAATAAAGATGAAAGGATGAAGGCTATGCAGTATTGTATCAAACTGAAAGATGAGAGGAGTGGTAAAGCTTCTTCTGAAGTACTGGATGAGGGTTCTACAGACAGAGATCATGACTTTTATAAAGCTCTAGATGAAGAAAATTTGGAGGATGACGCCGTGAAATTTAAGGCTGCTGATAAAGAAAAGGAATTGTTCCGACTTTCAGATGCCAGTGGTAGCATGAAATTCACACTTGCTAAGAAAGGACCTGTCTCTAAATCTGATTTTGACAGCAAAGATGTCTTCATACTGGATTCAAAGACTGCCCTACATGTATGGATCGGTAAAGACACCACAGCAAATGAACGCAGGAATGCCATGTCCTATGCACATAAATACCTCCAGAGTACCGATCATCCATTGGTATCTGTCAGTTGTCTAGCTGAAGGGAAGAAATCGGCAGCGTTTGAATTAGCCTTGGCAGCATAAGATCAATATGTAATAGTGCAGCCTTATTGTGATCAGCTTTAAAAACAGAAGAAATAGACATCAGATTTAACAGCTGTAGGACAGTGTGCTTCTAAATTAGAAACTATGTAGTTGTGTCTATATAAACTTAATCAAAATTTTAAAGATCTTCCAGTCATATATATCTATATTTATACGTTATTTGTTTTCTGTTTACTCACCAGCAATAATTTTTTTTATCTATGTTTACGCAAGTTAATTTTTTTTGCCTTTTTAATATACACAGGTAAATTATTATTTCAACATTACTTTTTTAAACAATATCATTTTTGCAAGTTAAAATGTTTATTATCATTGAAGCTAAATGGTAAAAATATTTATTATCATTGAAGCTAAATGGTAGGACTAAAACACTGACCAAGAAAGAATGGTTTTGAAAACTACCGTATCAAATGCCCTATGAACAAATTTTTTTGCCATTTACTTTGCAGTGTCAATAGAATTTACAAATCGTTAGTCCCTTAAATTATTAGTTTTCAACCATGACATGTCCATCTTAATATGAAAACTCTCAAAAGATCAGTGAATTGATTCAATTGTAAGGAAATCCAGACTTGCTTTAACTAAAATGTCTCAAAGATCAGTGAATTGATTCAATTGTACGGAAATTCAGACTTCCTTAATAGCTAAACTGTCTCAAAGATCAGTGAATTGATTCAATTGTAAGGAAATTCATACTTCCTTGATAACTAAAATGTCTCAAAGATCAGTGAATTGATTCAATTGTAAGGAAATTCAGACTTCCTTAATAACTAAAATGTCTCAAAGATCAGTGAATTGATTCAATGGTAAGGAAATTCAGACTTCCTTAATAACTAAAATGTCTCAAAATATCAGTGAATTGATTCAATTTTAAGGAAATCCAGACCTCCCACAAACTAAAATGTCTTCTTTTTTTTTAGAATTAAAATCCAGTGTCTGAGTATGCATACATTTGTAACGATCTATTTTTTGTTTATTTTTGCTTTCAAAATGACCTGGTATATTGAAAATTACTCAAGATGATTCACTGTGGTTTGTCAACAGTCGGTCATGTATATTATTCTAAAGTGGTCAGTTTATAACTGCTGTTAAATTTATCATAATATTATTATTGTACTTTACATCAATAAACAAATTTTAATAAAAACATTTTTCTCTGGTATGGCATTTTTTTCAAATACAGAATTAAAGTGTTTGAGAAGTAACGCATTATATATACATTTTCATATGTTTTATATGGTTGAGAATACTGTAATTTATAATGTACACAAAAAAGAATGAAATAATGTGATAGGGGATGACCACTATGTTGTTGTTTTTCTTTTTCTTTTTCTTGTTAACAAAATAAATATGAATGCTAAACTTCTATATTATAAATGTGGAAATCATTAATTTTTTTTTGCCTTACACTATTTATAGATTTTTTATTACTTTATATACAACTTCAATTTGAGGGTATTCATTATTGGTGCATTTAATTGTATGGATGTTCATAAGTAACACATGTTCCGTTTTTTTTCTTTCTTGTAATTTTTGTTTGTAGTAATTTCATATTGTCACACTTAATGCAAAAAAAAAATTAATGTTGTGAAATGTAAGAATTTTGTTCCTTGATGTTTTAGAACATTACAACATCATTTAATTGCTAAAATTCTGTCAAAAACTTCATGAAATGTGAACTTTGCAATGTAAAGGATTTTTGTTCCAGTTTTCTTATATTTAACGATAAAACAATTCCAATGTGCAGTCCCGACTAGTAAAACTTTGATTGGTCCAGTACATTTTTCAGTTTTTATTTAGATATGTATAAAAAATAATTTCAAGAATTTGATTCGGACCAGTAAATTCAAATTTTCATTTTGAGCACCGAATGTGTATATCAACAAAAATGTTTTGTTCTTGTTTACATGTAAAAAATTTACCTGATTTTATTAATTACTTTGAATAATAAGAATTAGTCAAATGTTCAGCATTTAAAATCAATTTATATTAAAATTTTTTATATTGTGGTTTTTGGTGAACTTATTGACCAGATTTATTTACTTGTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007122	Family	Villin/Gelsolin	Interproscan
IPR007123	Domain	Gelsolin-like domain	Interproscan
IPR029006	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11977	VILLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008154	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0051014	Biological Process	actin filament severing	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051016	Biological Process	barbed-end actin filament capping	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05768	GSN; gelsolin	-	Regulation of actin cytoskeleton	ko04810	PMID: 28812709
			Fc gamma R-mediated phagocytosis	ko04666	PMID: 28812709
			Viral carcinogenesis	ko05203	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_46551-1.2 global RNA-seq network