Gene detail

Detailed information of Bpl_scaf_46033-0.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_46033-0.6	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	Bpl_scaf_46033	47135	65451	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_46033-0.6

CCTCTATGTGACGCAGAATTGTTTACACAGCCTACTTTCATTTCACATTATTATCTTCAACATTTCAACAAATCGACAGGGTTTAATTGTATATAACACAATCACAAACAATGCAACCATGACATAAATACATTGTTTGAAAATGGCTTTTGATGAACCAGATAAAAAAGCTTCTGAAAAGAAAAAGGACAAGGAAAGTCCACCTACAAAAGTTCTTATTAGAAGGCTGCCACCAACTCTAACACCTGAATCACTTTTGGAGCAGTTATCTCCATTACCTAGTCATGAATTCTACTTTGTTAGAGCTGATATGAGTTTAGGACAAAATGCCTTCACAAGAGCCTACATAAATTTCCAAAGCTATGATGATGTATATAACTTTAGAGACCAGTTTGATGGCTATGTCTTTGTTGATGGGAAAGGTAATGAATATCCAGCCATTGTAGAGTTGGCTCCTTACCAGAAGGTACCAAGGAGAAAACCAAAGAAAATTGATGTTAAAATGGGTAGCATTGAACAAGATCCAGATTACGTCAAGTTTTTAGAATATTTACAAAATGAAGAAGCAGAGGAGACACAAACAATAGATGCTTACCTAGAGGAATTAGAAAATAAAGAAAAAGATATGAAAGCAAACCATGGAGTTATAAAAGTATCTACACCATTAATAGATTATATCAGAAAGAAAAGAGAGGAGAAAAAGGTTCTGTTACAGAAACAAAGGGAGGAAAGAAGGAAAAAAGATTTAGAAAGAAGAAAAATTAGGGAAGAGGAAAGGAGGAGAAGAAGAGAAAGGGAACGGGAAAGAGAAAGGGAGAAAGAGAAGGACAGATTTAAGGAAAAGGAAAAAGATAGACAGAAGGACAAAGATAGAGAATTTGAAAAGAAAGAAAAATATCAGGATGAGCAGCCTGTAAGGGTACTAAAGAAACATGAAAGAGATGAGGATAAAAATTCTGATAGAGACAGTGGAAAAGAAAAATTAAAAGAAACAATAAAAGATGTACAAAAAGATAAAGATATCAAGCCTAGGGATGAAAAAACAACAGATAATAGGCAAAAAGAAAGAGAGAAATTAAGATTCTCAAAGGAAAACAGAGAAAAAGAGAGAAGAGAGAAAGAAAAGAGGGAGAAAAGTAACAAAATAGCTGCAGCACTGTTTGATCAAAAACCTAAATCAAGTAGAGACGAGCGACAAGATGAAACTACAAAATCAACTTCTGAAGATAAGAAAGGACCAGAATCTGATAAAGGGAGAGAAACTAAATATGACGATAAAGGTAGAGGAGGAAAATGGGATGATGGTCCTGACTGGAAAAACTCAAAAGGATCAAAAGACGATAAAACATCTGATAGACCAAGATCAGGAAGGGATAGCCGCTCATCACAAGGTCGTCCAAGATCAGGACGAGACTGGGATAGAGATTGGGATTACAGAGAAAGAGAAAGAGAAAGGAGTTACAGAGATGAAAGACCAAGATCTTATGCAGGGTCTAGTCGTGATGACAGAAGAAAACAAGATTCAAATAGTTCTCCTGACAAGAGACCTTCTTCCACAAAAAAAGATTCAGCAGCGAGCTCTGAAAGAGAGAATGCAAAGGGTGACGGTAAAAGTTCTGAAAGAATTTCTGATAAAAAGGGAAGTGAAACCAGTGATAAACCATTAAAAAAAGAGAATTCAAGGCCAGAAATAGACAAAGAGAAAAAGACTGATCAATCAAAGGACAATGGTAGTGGGGATAGTAAACTGAAGTCATCAGACAGTTTTGATGATGATAGGAGAAAAAAGAGAAAGGAAAGACCAGAACGTGCAATATATGATCCTAGGAAAGCAGCGGAAAGACGAATGGGAACACCTAAATCTGAGTCAAGTAAAAATGACAAGTCATCTGACGACAAGAGCTCTGGCGATTAAATTATTGCTAAATGGTTCACTACCAAGGAGACCCTGGCCATTTGTTACACATCTGGCATGAAATAATTAACGTGACTTGTATTATATATAGTCTGTATGTCTGTTGTCACCATGCATTGGTTAAGGCTCACTAGATAATAGAAAATGTGTGTACAATTTTCATAAGCCGATTGTTTTGATTACATGTCTTGAGAATAATGACAATAGATAAGACATTGGAAATTTTCCTTTGAAAACAAGTCATGAATGCAGATAAACACTGAATGAGTAAAGGAAGGAAATTTAATAATTGTTGAAATTGGTGTTACTTGTTTTGTTTGTTGTGTATAATTTGAAATATCTAAAGTGTAAGATTGAAAACTGATATAAAAGATTATCAGATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03467	Smg4_UPF3	Smg-4/UPF3 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005120	Domain	UPF3 domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039722	Family	Nonsense-mediated mRNA decay protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14328	UPF3, RENT3; regulator of nonsense transcripts 3	-	RNA transport	ko03013	PMID: 28812709
K14328	UPF3, RENT3; regulator of nonsense transcripts 3	-	mRNA surveillance pathway	ko03015	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_46033-0.6 global RNA-seq network