Gene detail

Detailed information of Bpl_scaf_46023-5.17 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_46023-5.17	RING BOX	Bpl_scaf_46023	492759	504612	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_46023-5.17

CTCGAAACAAGAATGAACACTTCAGCGTCAAAATAAACAATGTCAGAAGAAATGGAAGTTGATCGTGAAACGGCGAAGAAACCAGAAAAAATGTTCACATTGAAGAAATGGAATCTTGTTGCTATGTGGAGCTGGGATGTTGAATGTGACACATGTGCGATTTGTCGAGTTCAAGTGATGGATGCTTGTCTAAGATGTCAGTCAGAAAATAAACAGGATGATTGTGTTGTTGTATGGGGGGAGTGTAATCATTCCTTTCATTTGTGCTGTATGACATTGTGGGTACAACAGAACAAGAGGTGTCCTCTATGTCAACAAGACTGGGAGGTTCAGAGGATAGGAAAATGATGGATGTAAGAACATTATTGTTTTTTGAGGATATCACAACAAAACAATTCCATGGATCAGTAACTACAAATTGTAACAATTCCATGGATCAGTAACTACAAATTGTAACAATTCCATGGATCAGTAACTACAAATTGTAACAATTCCATGGATCAGTAACTACAAATTGTAACAATTTAATTGATTACCTCTTTGGTATCTTCAAACTCTTCTTGAACCAAGGAGAATTTTAACTTGTACTGTTATTGGTTATGTACATTTAACTTATCTATTGTGTTGTAAATGGTTATGTACATTTAACTTATCTATTGTGTTGTAAATGGTTATGTACAATGTACAGTACTGTTTTTGACATTAATGTTGATTGTTTATTGTAAAATGTACCGGTATACCAGCTTCCTCAATTCTTATGTTTATACAAGACTGGTACTCTGTCATGCTGATAAAATGTTTTCTTTGAAAAAAGGTATATGATTATTTACACAACTGATTACAGATAAACAGTAATGATGTAGTCATTTTGAGATTATTTTTTTTACATTGAAGAAGAAAGGATGTAAATAAACATCAGACAAGGTGAAGAAGAAAGGATGTAAATGAACATCAGACAAGGTGAAGAAGAAAGGATGTAAATGAACATCAGACAAGGTCCAATTCTTCACTTAGACACAAATTGAAGTAAAAGAACAATGCTTTTATTGCTGTTCTACATTTCAGTGACAGTAGTGATTTCAATAATTAGCATGACTCACACCCTTAATGAGTGTGAAATGGCACCTACAATAGTCTGCAGTTAAGTAATGCTACATCAGGGCATCTATGTCTTCTCTCAATGTCATTTGAAATGCATGATTTTATTTCACAAATGCTGGGTTATCAATAATAAACAAGACATGCATGAAGTAATCTTACAAATACTGTCATCATTGTGCCTGAACATCACATGACGATGTTGCAAACACTGACAATGTATTGTTTTGTAGTAATTCAATTTGAATACTGAATGAGATGTTGATTATGGTAGAAAACAAGAAATGTTGACATCCTTTTCTGCATATTTAAATGTCTTTAAAGATTATGGTAATAGCATTATATAGAATGATGATGTGATGATGTGTGTGAAATACTTGTATCATATATTACTAATAATAGGAGTGAGTTTTTACTTTGTATTAAAACAACATTTTGAATCTAGTATTCAGTGCCAAGTTATACAGAGTATTTTGCTTTCTCCAAGGCCCATTGACATTCAGGAGAGTGTTTAGATCCATTTTCTTGGAATACATGTAACTTAAGTACCTGATGGGTGTAGTGTATTATATTTGTGTGGGTCATGGTCAAATGCGATATTGACACAGTTTTGATATTTTGTATACAATATTTATTTCCTCTTGTTCATTTTTGATTTTCTTGGTCCATGTACAATGTAGTTATCTAATTAGAATTTTTGATTTTCTTGATCCATGTACAATGTAGTTATCTAATTAGAATTTGATGTTTGTATGAAACACAGATAAAACAAAATTAAAACAGATACAATTGTTAAAGGGGCATTAGCTACGATTTTGACCAAAAAAAATATATGCTTTGGAAATTGGTCAATAGCTTTAAAATGATGAAATAAAGGTAAACACTTTCTGCCTTTTGAGAATGAAAATTACCATCGAATACTTATTTGCTTGCAAGCAAATAATTTGATCTCGCTTTTTCCGTATTCAATTGACCTTACTAGTGACAGGTAAAAACGAATAATTTGTATTTTGTCGCTTATTAATTGCCAACTTGCATGGTTCTTTGTCCGTAATTAACACCGACTAAAAGCAGATTCACAAAAAATAAGAAATAAGTGCATTGTTGTACTGATTTAATGACGATTTGACAAACTCTGTAAACAATGTCGATAATTAATAAGATGGCGTCCATGTCTTGATTGCTCTCAAAACACGAGCAGTTACACATTTTTTCCCCGATGCACGTACATTTCATAACATTTATAAGTTACAGAAACACGTTTTATTAAGGTATCAATCATATCTGATAGTTTTTATGGGTAACAAAAATATGCGATTTGGCAGATAATGCCCCTTTAAATGGCTAATTTTGAGTAGATTGCTTTCATGGTGTACTATATTTAAGTTTTTTTGAGTGCACTAATCTGAAGAAGAAAAAATGGTGACCACCAAATTATTAGAATACATACATTTCTACTTGCCCCTTATTTAATATTTTAATTTTTACCTATTGGTAATGAAATAGCAGTCTGTGCCAAAAACCACTAGCCCTATTCCTCAGGCTAGTAAAAATTACATCAAATTTACTTAATCATAGAGAGAAAAAAATCTTCTAAAGTGCTGTTAGGGCTAGTTTATCTAAATGTTTTTGGCACAGACTGAAATAGTTCTTTTTAGATATTAAAGCTTGGACATTGTTTATAATACAACAATTTTATTTATTTTTATGAAGAATAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12678	zf-rbx1	RING-H2 zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR024766	Domain	Zinc finger, RING-H2-type	Interproscan
IPR051031	Family	RING-box E3 Ubiquitin Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11210	RING BOX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031466	Cellular Component	Cul5-RING ubiquitin ligase complex	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097602	Molecular Function	cullin family protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10611	RBX2, ROC2, RNF7; RING-box protein 2	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_46023-5.17 global RNA-seq network