| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_45838-1.11 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 | Bpl_scaf_45838 | 75672 | 130993 | + |
| CDS | |||||
| Bpl_scaf_45838-1.11 | |||||
| Transcript |
| Bpl_scaf_45838-1.11 |
| Protein |
| Bpl_scaf_45838-1.11 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02854 | MIF4G | MIF4G domain | Repeat | Interproscan |
| PF04050 | Upf2 | Up-frameshift suppressor 2 | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003890 | Domain | MIF4G-like, type 3 | Interproscan |
| IPR007193 | Domain | Up-frameshift suppressor 2, C-terminal | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR039762 | Family | Nonsense-mediated mRNA decay protein Nmd2/UPF2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12839 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000184 | Biological Process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0005844 | Cellular Component | obsolete polysome | Interproscan |
| GO:0035145 | Cellular Component | exon-exon junction complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14327 | UPF2, RENT2; regulator of nonsense transcripts 2 | - | RNA transport | ko03013 | PMID: 28812709 |
| mRNA surveillance pathway | ko03015 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_45838-1.11 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
