Gene detail

Detailed information of Bpl_scaf_45838-0.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_45838-0.2	PROTEIN MCM10 HOMOLOG	Bpl_scaf_45838	42649	75499	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_45838-0.2

ATGGATGGAGAATGTGATCTTGATAGTTTAACTGCATTGTTAGAAGATTCCGATATGGAAGATGAAACAGAGGAAATTAAAAAAGAAGAAACTAAAATGAAAGATGATGATGATGATGGATGTGATTTAGATGAAATTACAGCATTCCTAGAACAGTCTGAGAGTGAGGAAGAGGAACCTGATTCATACTCAAAGGTCAAAGTGAAGCATGATTCAGAGAATAAAGAACAAACCATTGCTTCATCTAATACTGATGAACTAAGAGATAGGAATGATGCAGTTAAGGAAGGTAATAGGAACAAATTGTCAGAAGACAAAGAACTTGATTCTAGTGATGATGATGAAGATCAAGAAGATAGACCTGCTGAAGTTAACAATATTCAAGCTGAATTACTTGAAATGCAAAGAAAAATGCAAGAATTACAAGAAAGATTGGCCAATTCACAGGCTGCCGCCCCTAAACAGAAGAAAACAAATAAAAAGTCTTTGAACGATAACTCTTTGGGTGATGAACCAAATAAGAAACAAAATCGTGAAAAAAACTATAAACCTCAGTCAAAACATGTTACAAAAGATGAAGAAAACAATATACAAGTTAGAGACATGAAGAATGATAAAAGTCTTAAAGAAAAATATAAATCACATATTGAAAAGAAAACTATTGTTGAAGAAATATATCACAGTCAGACCGAAAACAAGCTTAGTGCTGAAACAAGCAGAAGACCTAGTGCTATTACAGATGGACCTTCTAATAAAAAAGACAAAATAATCTCCAAATGTCATGATACTGTAGAAACCAAGGACTTGTATGATATCTGTTCAAACAAAAGTAACAGTTCAGAAACAATTTTGCAAGGGAAAATGAGAAGTCCCACTGGGAACTTTTCCAACAATTCAAAAGCTAAAAATGAATTACCTTTACAAGAAGATGGAGAAAATCCTTTCTTTCCAGCGTATGAATCAAAGTCTAAATCAGAGAAATCATGTGAAGATAGAAAGACATTAGAGAAGAGTCTGTTTGGTGATGATGATGATGATGACAGTGACTGGGAACCTATGGAAGAAGATGATAAAGTAAAATTAAGTGATGAAGGTCATGAACTAAGTAAATTGATAAGGGATAGTGGTAAGACAAGACAATCTAATGTTACTCCTGAAGAGGTTGCTGCAATGAGGAAGAAAGCACAGACAAATAATTGGAAGGTGAAAGGAATTACACCTGAGAGTTCTGCATCATCTACGACTGCCATGAAATCATCAAAGGAAAATGATGTTCCTTGTGTCATTGATCCATTCTCTGGTATTAGAATTATAAATCCCAAAATATCAAGTTTAGATATGAAAGCTAGAATGAGAGACAGAAAACTAGTGAAAATTTCAAAAATAGACAGAAGAGTATCAGAACATGATAACTGGGTAACAGTCGGGGTAATTACCAGTAAAACAGATCCAAGACAATCTTCAACTGGTAAAACATTTTGTATCTGGAAGCTCAGTGACCTCCAAGACTGTGACAAGCTCATATCTTTCTTTCTGTTTGGGGAGGTATATAAACAACACTGGAAGAATGAAGTGACATCAGTTGTAGGAATCTTAAACCCTAATTTAATGGACAAGGCAGAAAAGGTACAAAATGATATGGCTTTCACCGTAAGTCATCCAGGTCAGATTATGATGATGGGGTATTCTAAAGATTTTGGAAGATGTTCTGCTATGACTGGCAAAGGAAACAACAGCGGCAAGCATTGCACTAATTTTATAAACAAACAACAAGGAGAATATTGTACATTCCATGTCCAAAGAGCATACAGTAAAAAATGTTCACAAAGGACAGAATTACAGGGAAGTTATTCTGGAATGACACCAAACAACCATAAGTATAAACCTAAAGGTAATAAAGATGCCTTTTTCTTCTACCAAGGACAGACTTATACAACAGGAAAAATTTCTACCAAGGATAGCAAGAAGAAAGTAACTGTTGACAAGCTTAAACAACAACAAGCTATGGTTGGTAACAAAAAAGTGACTACAATGTCAATCCATGCTATAGATACTGAGGATATAAAGAGGTTAGAGAAGTTAGATAAAGATAAAACAGAACAAAACCCATTGTTAGACATGTTAACAGTTCCAACACCTGGTTCTATGAACTTTGTAAAACATTTGATCACTAAAGACCAAAAACCAGCAGTAAATTCTGAACCAGACAAGACTATTATCAAGTCAGTAACTGCAGCAGAATTATTAAAACAGCACAAACAAGTTATGAGACAAAGGAAAGTAAACAAATCAACAGGAGGAATAACTCTTCCACCACCTTCTGACCCCATGAAATGTACTCCAACATTAGGGAGAGGACTAACCCCTGGGGGAGATATATGTCTGGGTGTAGCTTCAAGGTTACAAAGTCCCAAATCAGAATGGGCTAAGGTTAGTATGCATGGTCTTCGAAGGAATTGCTTCAATTATAAAACCTGGCCCTGGTTACTTGAAAAAAATATG

Transcript

Bpl_scaf_45838-0.2

AAATTTTGGCGGGTAAAACAGTAAACAAATGTAAAAGATTATGTAGATACTAATCAAACATAAGGAGTCTGAAACTACATGTAGGGTTTTAGAAATAAAACTAGGAAGGGAGAGGTCACTGATCCGTGTACCATTTATTGCCCAGCGGTCTTCCATCAGAACCCGTGGACGACACCTCCATTCCCCGTGGCACCTGTATTTCAGACTCCAATTTTACAGACTTACACTAGAATTTGACAGAATGGATGGAGAATGTGATCTTGATAGTTTAACTGCATTGTTAGAAGATTCCGATATGGAAGATGAAACAGAGGAAATTAAAAAAGAAGAAACTAAAATGAAAGATGATGATGATGATGGATGTGATTTAGATGAAATTACAGCATTCCTAGAACAGTCTGAGAGTGAGGAAGAGGAACCTGATTCATACTCAAAGGTCAAAGTGAAGCATGATTCAGAGAATAAAGAACAAACCATTGCTTCATCTAATACTGATGAACTAAGAGATAGGAATGATGCAGTTAAGGAAGGTAATAGGAACAAATTGTCAGAAGACAAAGAACTTGATTCTAGTGATGATGATGAAGATCAAGAAGATAGACCTGCTGAAGTTAACAATATTCAAGCTGAATTACTTGAAATGCAAAGAAAAATGCAAGAATTACAAGAAAGATTGGCCAATTCACAGGCTGCCGCCCCTAAACAGAAGAAAACAAATAAAAAGTCTTTGAACGATAACTCTTTGGGTGATGAACCAAATAAGAAACAAAATCGTGAAAAAAACTATAAACCTCAGTCAAAACATGTTACAAAAGATGAAGAAAACAATATACAAGTTAGAGACATGAAGAATGATAAAAGTCTTAAAGAAAAATATAAATCACATATTGAAAAGAAAACTATTGTTGAAGAAATATATCACAGTCAGACCGAAAACAAGCTTAGTGCTGAAACAAGCAGAAGACCTAGTGCTATTACAGATGGACCTTCTAATAAAAAAGACAAAATAATCTCCAAATGTCATGATACTGTAGAAACCAAGGACTTGTATGATATCTGTTCAAACAAAAGTAACAGTTCAGAAACAATTTTGCAAGGGAAAATGAGAAGTCCCACTGGGAACTTTTCCAACAATTCAAAAGCTAAAAATGAATTACCTTTACAAGAAGATGGAGAAAATCCTTTCTTTCCAGCGTATGAATCAAAGTCTAAATCAGAGAAATCATGTGAAGATAGAAAGACATTAGAGAAGAGTCTGTTTGGTGATGATGATGATGATGACAGTGACTGGGAACCTATGGAAGAAGATGATAAAGTAAAATTAAGTGATGAAGGTCATGAACTAAGTAAATTGATAAGGGATAGTGGTAAGACAAGACAATCTAATGTTACTCCTGAAGAGGTTGCTGCAATGAGGAAGAAAGCACAGACAAATAATTGGAAGGTGAAAGGAATTACACCTGAGAGTTCTGCATCATCTACGACTGCCATGAAATCATCAAAGGAAAATGATGTTCCTTGTGTCATTGATCCATTCTCTGGTATTAGAATTATAAATCCCAAAATATCAAGTTTAGATATGAAAGCTAGAATGAGAGACAGAAAACTAGTGAAAATTTCAAAAATAGACAGAAGAGTATCAGAACATGATAACTGGGTAACAGTCGGGGTAATTACCAGTAAAACAGATCCAAGACAATCTTCAACTGGTAAAACATTTTGTATCTGGAAGCTCAGTGACCTCCAAGACTGTGACAAGCTCATATCTTTCTTTCTGTTTGGGGAGGTATATAAACAACACTGGAAGAATGAAGTGACATCAGTTGTAGGAATCTTAAACCCTAATTTAATGGACAAGGCAGAAAAGGTACAAAATGATATGGCTTTCACCGTAAGTCATCCAGGTCAGATTATGATGATGGGGTATTCTAAAGATTTTGGAAGATGTTCTGCTATGACTGGCAAAGGAAACAACAGCGGCAAGCATTGCACTAATTTTATAAACAAACAACAAGGAGAATATTGTACATTCCATGTCCAAAGAGCATACAGTAAAAAATGTTCACAAAGGACAGAATTACAGGGAAGTTATTCTGGAATGACACCAAACAACCATAAGTATAAACCTAAAGGTAATAAAGATGCCTTTTTCTTCTACCAAGGACAGACTTATACAACAGGAAAAATTTCTACCAAGGATAGCAAGAAGAAAGTAACTGTTGACAAGCTTAAACAACAACAAGCTATGGTTGGTAACAAAAAAGTGACTACAATGTCAATCCATGCTATAGATACTGAGGATATAAAGAGGTTAGAGAAGTTAGATAAAGATAAAACAGAACAAAACCCATTGTTAGACATGTTAACAGTTCCAACACCTGGTTCTATGAACTTTGTAAAACATTTGATCACTAAAGACCAAAAACCAGCAGTAAATTCTGAACCAGACAAGACTATTATCAAGTCAGTAACTGCAGCAGAATTATTAAAACAGCACAAACAAGTTATGAGACAAAGGAAAGTAAACAAATCAACAGGAGGAATAACTCTTCCACCACCTTCTGACCCCATGAAATGTACTCCAACATTAGGGAGAGGACTAACCCCTGGGGGAGATATATGTCTGGGTGTAGCTTCAAGGTTACAAAGTCCCAAATCAGAATGGGCTAAGGTTAGTATGCATGGTCTTCGAAGGAATTGCTTCAATTATAAAACCTGGCCCTGGTTACTTGAAAAAAATATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09329	zf-primase	Primase zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR015408	Domain	Zinc finger, Mcm10/DnaG-type	Interproscan
IPR040184	Family	Minichromosome maintenance protein 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13454	PROTEIN MCM10 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10736	MCM10; minichromosome maintenance protein 10	-	DNA replication proteins	ko03032	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_45838-0.2 global RNA-seq network