Gene detail

Detailed information of Bpl_scaf_45643-3.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_45643-3.10	BICOID-INTERACTING PROTEIN RELATED	Bpl_scaf_45643	297759	304147	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_45643-3.10

ATGAGTGTAGAAGTGAAAACACCGACACGAACTCAATTTGAACATTCTGAGTTTCTGTGTGGAGACAAGCAGTCGAGTTCAAAGCCAAAAGTTGCACCAGTTTCCTTCAGGTTTGATGATAATCAGCATTACAGTCACAGAAGAGCAAGTGAAGGAGGGCAAAATCTGTCAGCTCAGTGGAATCGGAAAAGAAGATTTAGTTTTAATAGGGGAGACCACTATTTTGCTGGAGCACGCAGAAAAAGATGCAAATCTACGCCAAGTGAACAAATTGTACTTCCAACTAAATTTTTGTTGGGTGGCAACATAAATGACCCCTTAAACTTGAACAGTATAAATGAAGAAGAAAATGAAATGACCCCATATTCATCTCCTGTACCAACACCAGCACATAGAAAAGAACTAATTAATTCTGTGCCATTTAACATTAATGATCCACTAAATTTAGAGTCTGCAGATGATGAAATTGGAATTAAAGGCAACAAGAAGAAGAAAAGGGGCAAGAAAAGACATGAATCACAGTCCTTTATCAATCAGCCTCCAAAAGAATGGGTTCAGTCGGAGAAAAAGAAAAGTTTAATGGAAGCATTAAAAATTGAAATTGATGACACTTTAAATGATCAAAGTTCATCTTCAACAAAATCACCTAAATTTCAGGAAATGTCTTTTAAACTTCAAACTTCAAATAAACCGGATAAAATTGTATCTCCAGTTATTCCACAGACATCTCCACGTCCAAGGAAAAGGAAACGATGTATGAGTATGAATGATATTAAACCAGACTGTACTTCCTCAGCAGCTAGATCAATATTTAGAACATCATTAAGCCCATCTAGAACTATTGAAGCACAAAAAACACCACTGTTTAAATCTTCTAAAAAGCAAAGACATTCAAGTGCAAAAATGCAGAAAAATCCTAAATTTATATATGGAAATTACAATAGATATTATGGATATAGAAACCCAGAAACAGAAGATGATCATCGTTTACAATGCTTTAAACAAGAGTGGTTTGAAAATAAAGATATTTTAGATATTGGATGTAACGTGGGTCATTTAACACTTTCCTTAGCTAGAGATTATAAGCCGTCAAAAGTTGTTGGACTAGATGTTGACAGAACTTTAATTTCAGCAGCAAGAAAAAACATCAGGCATTATATTTCAACAAAGAAATCAAGCGAAAAAACTTTCCCAGTGTCAAATTTAATCAATTATGGTCCAATTTCTGCACCTCCAGTAACTGAAAGCAGTCAGACTCAGAGACAAGAATTTCCGTACAATATAGCATTTATACAGGGGAACTATGTATTGGATACTGATGTACTGGTGGATCAACAGAGGGAAGAATATGATGTAATATTGGCTTTAAGCATAACAAAGTGGATTCATCTAAATGGAGGCGATGCAGGATTGAAAAGATTTTTTCGTAGGATCTTCAACCATCTTCGTCCTGGAGGGAAGCTGATCTTGGAACCTCAACCTTGGTCATCGTACAAGAAGAAGAAAAAATTAACAGAGGATATCTACAAGTGTTTTCAGAGTATTAAATTAAAACCACCACAGTTTTCTGATTACCTTCTGAGAGAAGTTGGTTTTTCTACCTGTGAAGTAATTGATGTTCCCTTCAACAAGTCTAAAGGTTTTAGACGTCCAATTCAACTCTACACAAAACCTGAAACGGCGTCAAATAGTCCAAAATCGTCAGAGGAAACTCCATCATCTACATCTCTCCCTGAAGCAGACGATAATTCTAGTTCTACATCAAATTCGCAAAAACTTGTCAGTGAAATGAGAGACATTAACTCTGATAAAATCTTGAAGGAAGAAAATTCTTTAAATGTGAATACAAATGAAAAAGATGAAACAAGGGGAGATGACTCTGTACAAAATGATAAATCTGATGAAAAAGATGAAACGAAGGGAGATGACTCTGAACAAAATGATAAATCTGATGAAACAAGGGGAGTTGACTCTGTACAAAATGATAAATCTGATGAAACAAGGGGAGTTGACTCTGTACAAAATGATAAATCTGATTTGACTGTGTGA

Transcript

Bpl_scaf_45643-3.10

CACAAATAGTGAGCGGAGTAGTCAGTCAATTCTGGCCGGACCTTTGAAGAAAACATTGCATATTGCAGAGCCGAAGATGACATATAACTACTGATTAATTTTACGATATCTACAACTTTACATGTATAGATAATATTTTTGTCTTCAGGTGGTATTTTGTGAAAAGTTGAATAGGCTAATATTTGTTGATGTTATTGTGACCGTATTTTTCGGTCGAATAAATTAGCCACCAGGTGGCGTCATTGTTCCAACGTTTACAAACGAACACGTGCTTGATGTAAACAGTGTCAGTGTTGTTCAAAATGAGTGTAGAAGTGAAAACACCGACACGAACTCAATTTGAACATTCTGAGTTTCTGTGTGGAGACAAGCAGTCGAGTTCAAAGCCAAAAGTTGCACCAGTTTCCTTCAGGTTTGATGATAATCAGCATTACAGTCACAGAAGAGCAAGTGAAGGAGGGCAAAATCTGTCAGCTCAGTGGAATCGGAAAAGAAGATTTAGTTTTAATAGGGGAGACCACTATTTTGCTGGAGCACGCAGAAAAAGATGCAAATCTACGCCAAGTGAACAAATTGTACTTCCAACTAAATTTTTGTTGGGTGGCAACATAAATGACCCCTTAAACTTGAACAGTATAAATGAAGAAGAAAATGAAATGACCCCATATTCATCTCCTGTACCAACACCAGCACATAGAAAAGAACTAATTAATTCTGTGCCATTTAACATTAATGATCCACTAAATTTAGAGTCTGCAGATGATGAAATTGGAATTAAAGGCAACAAGAAGAAGAAAAGGGGCAAGAAAAGACATGAATCACAGTCCTTTATCAATCAGCCTCCAAAAGAATGGGTTCAGTCGGAGAAAAAGAAAAGTTTAATGGAAGCATTAAAAATTGAAATTGATGACACTTTAAATGATCAAAGTTCATCTTCAACAAAATCACCTAAATTTCAGGAAATGTCTTTTAAACTTCAAACTTCAAATAAACCGGATAAAATTGTATCTCCAGTTATTCCACAGACATCTCCACGTCCAAGGAAAAGGAAACGATGTATGAGTATGAATGATATTAAACCAGACTGTACTTCCTCAGCAGCTAGATCAATATTTAGAACATCATTAAGCCCATCTAGAACTATTGAAGCACAAAAAACACCACTGTTTAAATCTTCTAAAAAGCAAAGACATTCAAGTGCAAAAATGCAGAAAAATCCTAAATTTATATATGGAAATTACAATAGATATTATGGATATAGAAACCCAGAAACAGAAGATGATCATCGTTTACAATGCTTTAAACAAGAGTGGTTTGAAAATAAAGATATTTTAGATATTGGATGTAACGTGGGTCATTTAACACTTTCCTTAGCTAGAGATTATAAGCCGTCAAAAGTTGTTGGACTAGATGTTGACAGAACTTTAATTTCAGCAGCAAGAAAAAACATCAGGCATTATATTTCAACAAAGAAATCAAGCGAAAAAACTTTCCCAGTGTCAAATTTAATCAATTATGGTCCAATTTCTGCACCTCCAGTAACTGAAAGCAGTCAGACTCAGAGACAAGAATTTCCGTACAATATAGCATTTATACAGGGGAACTATGTATTGGATACTGATGTACTGGTGGATCAACAGAGGGAAGAATATGATGTAATATTGGCTTTAAGCATAACAAAGTGGATTCATCTAAATGGAGGCGATGCAGGATTGAAAAGATTTTTTCGTAGGATCTTCAACCATCTTCGTCCTGGAGGGAAGCTGATCTTGGAACCTCAACCTTGGTCATCGTACAAGAAGAAGAAAAAATTAACAGAGGATATCTACAAGTGTTTTCAGAGTATTAAATTAAAACCACCACAGTTTTCTGATTACCTTCTGAGAGAAGTTGGTTTTTCTACCTGTGAAGTAATTGATGTTCCCTTCAACAAGTCTAAAGGTTTTAGACGTCCAATTCAACTCTACACAAAACCTGAAACGGCGTCAAATAGTCCAAAATCGTCAGAGGAAACTCCATCATCTACATCTCTCCCTGAAGCAGACGATAATTCTAGTTCTACATCAAATTCGCAAAAACTTGTCAGTGAAATGAGAGACATTAACTCTGATAAAATCTTGAAGGAAGAAAATTCTTTAAATGTGAATACAAATGAAAAAGATGAAACAAGGGGAGATGACTCTGTACAAAATGATAAATCTGATGAAAAAGATGAAACGAAGGGAGATGACTCTGAACAAAATGATAAATCTGATGAAACAAGGGGAGTTGACTCTGTACAAAATGATAAATCTGATGAAACAAGGGGAGTTGACTCTGTACAAAATGATAAATCTGATTTGACTGTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06859	Bin3	Bicoid-interacting protein 3 (Bin3)	Family	Interproscan
PF13649	Methyltransf_25	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010675	Domain	RNA methyltransferase bin3, C-terminal	Interproscan
IPR024160	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR039772	Family	RNA methyltransferase Bin3-like	Interproscan
IPR041698	Domain	Methyltransferase domain 25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12315	BICOID-INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008171	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0040031	Biological Process	snRNA modification	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15190	MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme	EC:2.1.1.-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_45643-3.10 global RNA-seq network