Gene detail

Detailed information of Bpl_scaf_45587-5.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_45587-5.2	NUCLEAR RECEPTOR COACTIVATOR 5-RELATED	Bpl_scaf_45587	494843	526015	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_45587-5.2

ATGCCGACAAGGTCCCGGAGTAGATCTCGCGAACGTTTAGACCGATTTGGTAGAGTAATTCACCATTTGGACAGGAGGTCTAGAAGTCGTAGTCCAAGAAGACGTAGTAGGAGTCGCAGTCATAGTTTGAGGTCAAGAAGTCGTGACAGGCGAAGGTCTCCAAGAAGATCACCTAGAGTGTATAGAAGAAGTCGTAGTAGGAGCTCTTCACGAAGGCATAGATCTCCGCGACCGAAGAGTAAAACACCTCCAATTGGAAACCGCACAAATATAAATGATCTTGATTTGATGAAAGCTAGAGTTTTTGTTGGAAATGTTCCGGTTGGTGCCATTACAAAAAAGGAATTGGAAGAGATTTTTCAGAAATATGGAAAAATTATAGGTCTTTCACTTCACGATAGAGGTTTTGCCTTTGTACAATACGAGAAAGAAGACGACGCATTAAAAGCTGTAGAGAACGAGAATGGTGGATTGTTGAAGGGCAGTAAATTAGAACCACATTGGTCTACATTTAGTTATCGATATCCACCTCCAGGGAGGTCAGGTTCAGCAGATACAGATAGATATCCTCCACCCTTATCTGGTAGTGTAGAAAGAGAAAGATCACCTCTGAGGGCAGATCCATATGATGACCGTTACAGAGATCCCTACAGGGATGTACCACCACCTCCACGATATCCACCACCTGTAAGACGAGACCCATATGCTGACCCGTACAGAGATCCATATTTCAGGGATCCAGCTCATGACCCTCTAGCTGCTGTGAGGAAAGCAGCACCACGATTAGACTGTCAAATTGTCATTCTGAATCAGACACTGATTTTAATTTCTGAGGATCAAACAATACCTCAGGTTGTAGAGGTTGCTGCTAAAAAGCAGTGTCTGTTTGCCATTGTTGTAAACAGTCAGAATGAAGTTCATCAGTCATTAACAGTCAACATTTTACATGGAACTCCACAAGAACACAGGAATATGCCAGTGGATGATGCCGTTTCATTAATTGGGAGAAGTTTTGATGCTTATCAGCTCACAAAGCGTGAAAAAGAAGCAGCTGCAGCTAGACCAGCTCCTACTGCGGCAGTTAGGGCTCCGCCCCCATTTGTTCCTCCCTCACAGGACATATTGTATCTGTTGAATCTATTAGCTGATAAAAGACAGCTTACAGTTGATGAGCTAGACAAAGTCATCAAATATCTGACAGACAGAAGGGACAAGCTTCTAGAGTCGGAGGGGCGTCTGCCAAAATCATACCCAAGCAGCCAAAGTAATATGACAAGACCTTTAAACAGTGCTGATCTGTATAATGTGCCTTCTGAAGCATTGGGAACATTTCAAACAGAGATTGAATATGTAACTCCTGAAACACATCTTGAAATTGATATCAATACAGGATACTCTGGAGTTCCGAGTCCCGAGTTGGTCCAGTCAGAAACTCCTATTGGACTCCATCAGCTAAACAAAATAATAAATAAAAAGAACAAAGGAAAGAAAGGACCAGGTGGGCCAAAATCAGCAGAGGAACGAAGAATGATGAACAAAACTCGATATGGTCCACCAATCCTGCCAGCAATAGCTGAAGTGGTACAGACTGTGTGTACAACTACAGCCAATGTTTATCAGATAGTAGAGCGCTACAATATACCAGAGAATTGTCCATATCTGAGACCCCCTGCTGTTCAACATGATATATTTAAAACCATCAATGCACAGCAGAGAAGTTACGACAATTTTATGCAGTCTGTATACATACAGCTGGGTATAGCTATGGTGCCACTCATACAGTCGTGTACCTTCTTTGAAAAAAATATTACAATAGACAATGAGATTGTCTATCAGTTGTTGAAGGATAGCATGCTATTGTTGTGTAATCTTTTCCTGGAGATATCCATCAAACGAAGACATAACCTTCGTGTACATCTACCAAAACACCAAAGATGGCTTTGTGTGCGGAAGATGACCATAGGGTCTTATTTCTTCCCAGAAGAATTGTTAAAAAGCAAAAAGGAACCCAAATATCTGAAGCAGGAATTTGATAAAACACACAGTTCAGATGATGAAGAAAAAAACATCTATGCACAACAGTTATTGAACAAGAAGAGGATAGATGATTCCATGACAGATGTGCCTACGTGGGAAATGATTGCAGAATTAGTCAATCTGGCCTGTACCATTCCGGTTAATCTACAGGAACTGAAGAAATTACGGGAAAAGTACCCAATACCAGAGAACTGTCAGTGTCTAAAACCACCTCTATGTAATGAAAGTGTTTGGCACCAGATGAATAATCTAGCGGTGAATGACGATAGAGATTTACAGAATATACAGAGGTTAATAGGTCATGCTGTAGTACCGGTTCTTATCATGCTTGAGAGCATAAAGTTTGTAAATGTACTGCCATTTGATATGTTCTCAATGCAGAAGGAGGCATTGTACATTTTATGCACTACATTGCGGGACATTTCGTCTACTCGAAGATGCTATCTGAAAGCAGCTCTACCAGAGCCTTTAAAAGTCAGATGTGCACGATGGATTCCTATAGGCCGTTTCTTGTGTGGGGACGGTACAGAAAGTTATGGTGGAGCTGGAGAGCCAAAGGCTGATACCCAGAAAGATTTACAGGCCAAAATTCTAAGCATACTTAATGGCCCAGGAGAAGGAGGCACCGGAGGCATGGGAGGGATGTCAAAACCCGAAGGAAATGGGGCTTTGGATGGGAGGCAACAACCAGGAGGAATGTCTTCTCTTATCAATCTGGATAACCCTAATGTCCAGAAAGCTTTAGATAATCTCATTCAGAGTGGTCCAAATTTGTTAAAGACATTGTCTCATTCACCGGGAAACCCCTCTCAGCCAGGTATGGCTATGATGAGTCGAGAAAGTCAGCATACTCAACCTCAGTCTTCTATGGGAAGGGATCCTTATGGTGTCCCTCCACCAAGAGTACAACCTGCTGGTATGCAGCAGATGGCAGGAGGAAGACAACCATTTGGTGGTGGTGCTAGTGCTGGAGGTCAATCACGCTTGACCAACCCCGTAGGAATGCCACCTAGGAGGCCACCCCCTCATTATTAG

Transcript

Bpl_scaf_45587-5.2

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036621	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR052600	Family	Nuclear receptor coactivator/corepressor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23295	NUCLEAR RECEPTOR COACTIVATOR 5-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19756	RSPH4_6; radial spoke head protein 4/6	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_45587-5.2 global RNA-seq network