Gene detail

Detailed information of Bpl_scaf_44642-3.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_44642-3.11	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	Bpl_scaf_44642	421600	466500	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_44642-3.11

ATGGCGGCTGAAAAGAGCGATCTAGAATCGCGAAGACAACAAAAATCCGAATCACAGAGTCAGGATGGAGAATATGAAAACTATGGCGATGAACCAGATTTCAGTGACCCTGAAGACTTTGAAGATAATATAACAGAAGAAGAATTGCTTGGGGATTTGTTGAAATCAAAACCAAAGGAGTCTGATGGTATTGATAATATCATTGTTGTTGACAATGTACCACAGGTCGGCCCTGATCGTCAAGAGAAACTATCAAAAGTTATCAGAAAACTCTTTGAAAAATTTGGGAAGATAGTATATGAATATTACCCAATGGATGATGAAATAACGAAAGGATACATCTTCATAGAATACTCATCACCAAGCCATGCTTTGGAAGCAGTGAAGATGGCTAATGGTTACAAGCTTGATAAGCAACACACATTTGCTGTCAATTTGTTCTCAGATTTTGACAAATATGGAAATATACCAGATGAATGGGAAGTGCCTAAACCAAAACCATTTAAGGATGTGGGTAATTTAAGATATTTTTTGCAAGAACCAGACTGCTGTGACGAATTTAGCATTATTTATGATGGAGGAGAAAAAACTGCAATTCACAAAAATACACCAAGAGAATCTACTGTGCTAGAGGAAAGAGCGAGGTGGACAGAAACATATGTAAGGTGGTCACAACAAGGAAGTTACCTAGCAACTTTCCATGGCAAAGGTATTGCATTATGGGGAGGACCAAAGTTTGAACAGATCATGAGATTTAGTCATCCAGGTGTACAGTTGATTGACTTTTCACCTTGTGAACGCTATCTTGTGACTTTCAGTCCTCTACAAACCAATCAAGAGGAACCAAGTGCTATTATTATATGGGACATTAGAACTGGTCAGAAGAAGAGAGGATTTCACTGTGAGACACAATCAACTTGGCCCATATTTAAATGGAATCCAGATGGTTTATATTTTGCCAGAATTAGTCCAGATACATTGAGTGTCTATGAAACGCCATCATTTGGTCTACTAGAAAAGAAAAGTCTAAAGATTACAGGAATAAGAGATTTTAGCTGGTCTCCGACAGATAACCTGATAGCATACTGGGTACCAGAAGATCAAAACGTTCCTGCTAGAGTGACATTGATACGTATGCCAAGCCGTGAGGAAGTGTGCGTCAAGAATCTCTTTAACGTGGCTGACTGTAAAATGCATTGGCAAAAGAATGGTGATTATCTGTGTGTAAAAGTTGACAGATATTCTAAAGCAAGGAAAGTGGAAGAAAAAGATCAGTACAAATACACTGGAATGTACTACAATTTTGAACTGTTTAGAATAAGAGAAAAACAGATTCCTGTCGACAAAGTAGAAGTTAAAGAGAACGTAATGGCATTTGCCTGGGAACCTACAGGAAACAGATTTGCCTTTATTCATGGTGAAAGTCCTAGAATCTGTGTATCATTTTATACCATCAGACAGACGGGCAAAGTAGAACTAATAAAAACATTAGAAAGACGGCAGGCCAATCATTTGTTTTGGAGTCCTGCTGGACAGTTTATTGTATTGGCTGGACTTAGAAATTGGTGGGGACATAAGGTAGACAATGGTTACTGGCTATGGTCATTTCAAGGTAGAATTCTACAGAAACAGCCTTTAGAGAGATTCTGTCAACTTCAGTGGAGACCTAGGCCAGCTTCTCTTCTAACAGCAGAACACGTTAAGAGTTTGAAGAAGAATATGAAGAAATATACAGAACAGTTTGAATCTATTGACAGACTGAGACAGTCCAACGTATCTTCTGAGCAGATAGAGAAGAGAAGATCTCTAATGTCAGACTTCCAGAAATACAGACAAGATAAAGAAGATGAATATGCTGACTATAAAGACAGAAGACTAGGACTACGAGATGGTGTTGACACCGACATCTTGTATGACGAAGAAATTGATGAAGAAGTTGTTGAGTTCCTTTTGAAAGTCGAAGAAGTCATCGTAGAGGAGTAG

Transcript

Bpl_scaf_44642-3.11

AATCCACGAGGTTTCAAGATGGCGGCTGAAAAGAGCGATCTAGAATCGCGAAGACAACAAAAATCCGAATCACAGAGTCAGGATGGAGAATATGAAAACTATGGCGATGAACCAGATTTCAGTGACCCTGAAGACTTTGAAGATAATATAACAGAAGAAGAATTGCTTGGGGATTTGTTGAAATCAAAACCAAAGGAGTCTGATGGTATTGATAATATCATTGTTGTTGACAATGTACCACAGGTCGGCCCTGATCGTCAAGAGAAACTATCAAAAGTTATCAGAAAACTCTTTGAAAAATTTGGGAAGATAGTATATGAATATTACCCAATGGATGATGAAATAACGAAAGGATACATCTTCATAGAATACTCATCACCAAGCCATGCTTTGGAAGCAGTGAAGATGGCTAATGGTTACAAGCTTGATAAGCAACACACATTTGCTGTCAATTTGTTCTCAGATTTTGACAAATATGGAAATATACCAGATGAATGGGAAGTGCCTAAACCAAAACCATTTAAGGATGTGGGTAATTTAAGATATTTTTTGCAAGAACCAGACTGCTGTGACGAATTTAGCATTATTTATGATGGAGGAGAAAAAACTGCAATTCACAAAAATACACCAAGAGAATCTACTGTGCTAGAGGAAAGAGCGAGGTGGACAGAAACATATGTAAGGTGGTCACAACAAGGAAGTTACCTAGCAACTTTCCATGGCAAAGGTATTGCATTATGGGGAGGACCAAAGTTTGAACAGATCATGAGATTTAGTCATCCAGGTGTACAGTTGATTGACTTTTCACCTTGTGAACGCTATCTTGTGACTTTCAGTCCTCTACAAACCAATCAAGAGGAACCAAGTGCTATTATTATATGGGACATTAGAACTGGTCAGAAGAAGAGAGGATTTCACTGTGAGACACAATCAACTTGGCCCATATTTAAATGGAATCCAGATGGTTTATATTTTGCCAGAATTAGTCCAGATACATTGAGTGTCTATGAAACGCCATCATTTGGTCTACTAGAAAAGAAAAGTCTAAAGATTACAGGAATAAGAGATTTTAGCTGGTCTCCGACAGATAACCTGATAGCATACTGGGTACCAGAAGATCAAAACGTTCCTGCTAGAGTGACATTGATACGTATGCCAAGCCGTGAGGAAGTGTGCGTCAAGAATCTCTTTAACGTGGCTGACTGTAAAATGCATTGGCAAAAGAATGGTGATTATCTGTGTGTAAAAGTTGACAGATATTCTAAAGCAAGGAAAGTGGAAGAAAAAGATCAGTACAAATACACTGGAATGTACTACAATTTTGAACTGTTTAGAATAAGAGAAAAACAGATTCCTGTCGACAAAGTAGAAGTTAAAGAGAACGTAATGGCATTTGCCTGGGAACCTACAGGAAACAGATTTGCCTTTATTCATGGTGAAAGTCCTAGAATCTGTGTATCATTTTATACCATCAGACAGACGGGCAAAGTAGAACTAATAAAAACATTAGAAAGACGGCAGGCCAATCATTTGTTTTGGAGTCCTGCTGGACAGTTTATTGTATTGGCTGGACTTAGAAATTGGTGGGGACATAAGGTAGACAATGGTTACTGGCTATGGTCATTTCAAGGTAGAATTCTACAGAAACAGCCTTTAGAGAGATTCTGTCAACTTCAGTGGAGACCTAGGCCAGCTTCTCTTCTAACAGCAGAACACGTTAAGAGTTTGAAGAAGAATATGAAGAAATATACAGAACAGTTTGAATCTATTGACAGACTGAGACAGTCCAACGTATCTTCTGAGCAGATAGAGAAGAGAAGATCTCTAATGTCAGACTTCCAGAAATACAGACAAGATAAAGAAGATGAATATGCTGACTATAAAGACAGAAGACTAGGACTACGAGATGGTGTTGACACCGACATCTTGTATGACGAAGAAATTGATGAAGAAGTTGTTGAGTTCCTTTTGAAAGTCGAAGAAGTCATCGTAGAGGAGTAGACGAGAGAATTTCACCACCGTATTTTGTCGCCTTTTGTTGATCTTATTAACACCAGCCAAATCAACAGCAGCCATCTTGGAAACAACAAGGGGAGACCTATTTATTGAAATTTGACTTGATTTTGCTGATTTTTACTGATTATTTATGGAGTATTGTATGTCCTTAAAAATGATGCATTATTTACAAAAAGTGCTTAAAATTTTAATGCTATTTATATATCCCTTCATCCCACTTAGTATGTTATTTTCTCATTTTTCTGGTCTTTTTCCGGTACCTTATCGATTATGTGTTGTATCAATTAGCTATATAATTAAATTAAAGTTCTGTCATGTGTTCAGACACCGAAGAAAAATTGATTTTTTTTTAATCAAGCTTCATAATAAAACATTTGGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08662	eIF2A	Eukaryotic translation initiation factor eIF2A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011400	Family	Eukaryotic translation initiation factor 3 subunit B	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013979	Domain	Translation initiation factor, beta propellor-like domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR034363	Domain	eIF3B, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14068	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03253	EIF3B; translation initiation factor 3 subunit B	-	RNA transport	ko03013	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_44642-3.11 global RNA-seq network