Gene detail

Detailed information of Bpl_scaf_44428-7.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_44428-7.10	DEUBIQUITINATING PROTEIN VCIP135	Bpl_scaf_44428	805874	835184	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_44428-7.10

ATGTCAAAAAGGCGTGAAGATTACAAAGTTTTGTGTGGTACCTGCCCAGATGAACAGTGTCGTGCCAAATTATTTTTTCCAGCCTACGATAAAAGTATTGAATGTACCAGTTGTGGACAAAGACATGAAAAATCAACTCTCCAGAACGTTGCTGAGGTCACCAATCCGAGCGTTGCTCTACACAATATTCTAAAAAACATTTTATTGGGAAATGTTAAACCAAAGAAAGGACCTGACAATGTTAAAGTTTTAGGATTATCTAATTATGTGTGTAAATTGGTATCACCCATCTTGACTAGTTATGGAATGAGTAAGAAAACTGGCAAAGCACAGCTACTCACAGAACTTGGACAACCAGCTGTTTTTGATTGTGGTAAAATTTTAGGTGATAGAGCATTTCTGATTGAAGAAGACAATTTATGCATCACCGGTTATGGCCGTGACAAAACTGGTAGCCTGAGATATTTATCTAGTACACTAGACATAATTAAAGATGTGAATAATAACGAGGAACGTCTTGTAGCTATACATGCTGATGGAGATGGTCATTGCTTAGTTCATGCTGTGTCTCGTGCACTCGTAGGAAGAGAGCTTTTCTGGCATGCATTACGTGTAAACTTAATGAATCATTTACAGGACAATATAGAAAAGTATAAAGAATTGTTCAAGGATTTTATTGATACCGATGAATGGAATGACATTGTAGAAGAATGTGACCCTCAGTTCTGTCCAAAAGATGGAGAACCGCTAGGTCTAAGAAACATTCACGTATTTGGATTGGCTAATGTTCTCAGACGACCAATCATATTGTTAGATTCTGTTGATGGTATGCAAAGTAGTGGTGATTATTCTGGTGTGTTTTTACCTGGACTCGTCAAACCAGAAGATTGTAAAGGTAAAGATGGAAGTTTAAACAAACCAATCTGTATAGCCTGGAGTAGTGAGGGCAGAAATCATTACATACCATTGGTTGGTATCAAAGGAAAACCACCACCTAAACTACCATGCTATATGATACAGAAGACATGGGGAATGCCACGTACACTGTTAGACAGATATATTGAATTAGATGAGTTTGGACACTGTATAGTTGGTGGGGATAAGTGTTTGTCTGACAAATATATCAGACATCTTGTATCTGCAATGGAAGAGGTATTTTATGAAAAACATGGCGTACAACAACAACTTGTAGCAGACGTACATCAGTTTATGTACAAGACTTCAGGTATTGTTGGTGTTCAGCCTGAAGAAGTATTAAAGACCACACAGAGAGCTGTTAAAGAGAACAAATTGTACCGATGTTTAACTTGTGAGGGTGTGATGGAGTATATTCTACCTCCAGAGTGGTTCCGTAAGGGAGGAAGCTTGTATAATCTTGCCATACAAACACAAGGAGCTCTAAAACCAGATAAAAAATATCAGTTTCCAATGCAAGGTGTTGTATGTACTTATGACGATGCAAAGGATGTCCTTGAACCTGACATGTCTAAAAGTCAACTGAGTATATGTTCCTTCTGTCAGGGAGCACATGTTCGCCTGATAAACGGAGATGGCAGCATTAAGTATGAAAATGGTGATCGTACAACAACACCAGCACCAAATGGTAGATGTACTTGTGGTTTTAAGCATTACTGGGAAGGCAAGGAATATGACAATCTACCAGAACTTTTTCCAATAAGCATGGAATGGAATGGTCAGGTGGTTTCAGAAAAGGTTGCCTGGTTCCAGTATGAGTCTGATGACTCTTGTAACAGTAATGTTTTTCAAGTAGCACAAAAAATAGTACAAAAACATTTTCCAGGAGAATTTGGGAGTGAGCGACTTGTACAACAGGTTGTTAACACGATACTACGTCGCACGGCTGCACAGAAAAAAGATCCAGAAAAAACAGTAGTTAATCCTTACAGTGATGAGGGTTTTTCTGCTGATACAGCATCAAAAATAATACTCACAGGCCATGCACACAAAACTTTACATAAAGAGGAATTGTGTAAAAGTGAGACGGAGAAACAATTGAAAAAACGGATCACATCAGAGGCTGCCAAACACCAACACAAGAAATCTATACCCTCTACCTCAGCACCAAAGTCTAGTCCTAAAAAGTCTAAATCATTTGATTCGGGTGTTCAATCAAAAACATCATCAAGTGATGTTACCATGACAACTTCAACGAAAAGTTCATCACCAAAGAAATCAGACGGAAAGAAAGTGAAGATAGCTACTTCTGATGGCAGACAGATGATGTTATCCCTTCCAGGGGAGGTAACCTTTAAGCAGCTGAGAGATCTTATAGCTGAACATGTCAGTCTGTCACCTGATCGTCAGAGGCTCAGAACAGGATTCCCTCCAAAAGAATTAAAACAACCAGAAAATGCTGATGAAATAATTCCATTATTACACGGTGATAAAATCAGTGTAGAAATTCTCCCTGACAAATCCATTCCCATGGAAACTGATGTCAGTAAAGACAGTAGTGGACATTGTAGGGATATAAAAAAAGTGGGTGAGGTTCCAAGTGGAAGCAGAAGTGTGAGATCATGGAGTAGTTTTGAAGAGGATGCACAAGGGAGTACTGAAGAAGCTCTTCTAAGAGCATTGAAAGCTACTGAAGGAGCAACTGACAGTATCGACTCATCTATTGCTAGTCTGGCAGTTATGTCAACAGTAACAGGTCGTGACCTCTGGACCTACGTACAGACAATGCCACACCTGTTCTCAGTAGGGGGTCTATTTTATAAACAGATGGAAAGAGATCTAGGTCTAGTTGAGGGAAAACACTGTCAATTACCTGCTCTACCAGGAAAGGTTTTTAAATACAATAGTCATGAAGACAGATTAGAGTTGTGCTTAGAACCACATGGACACTTTCCTGTAGAACCAAGAATAGAGGAAAAGGTCAAAGAAATGGTGGCTTCTGGGAAATTATCAGAAACAAGGTTTGGTAGCAGTGGAGCTATAGGACGACATAGTCCTAGGCTGCAAGCTTTTGCAGGTCAAGGTCATTCTTTACGATCTGCAGAAATTGAAAAGATGCCAGGAGATATTCCAGAGCCGATCGGCCACCACCATCATAAAAACCATCATCACCAAGTCCGAAAACTTCAAAACCTGTGTGATCCTGACCGACATGAGGAATCAATAAGTGAAGAATCTGAAGAAATTTTAGTTGATCTTCCTCAAGCACAGACACCTGATGTAGGCTACCAAAAATTGGGACCAGGCTACAGCGTTATCAATCCAGAGAATGTCAACCAATCAAATGAGAACCTACAATTGTAA

Transcript

Bpl_scaf_44428-7.10

CGCAGTTACCACTTCCTGTTTTGATGAAATCGAAAGATATGTACAGAAACTGCGATATGACGAAATGTGAACACCCTACAGCACGCACGAACTTATTATTGATTCGCAGAGGAACTTATATGTATATAAATTGCAGGAGCTTTAGTTAAAAGCATCATAATAGAACAGAGAATGTCAAAAAGGCGTGAAGATTACAAAGTTTTGTGTGGTACCTGCCCAGATGAACAGTGTCGTGCCAAATTATTTTTTCCAGCCTACGATAAAAGTATTGAATGTACCAGTTGTGGACAAAGACATGAAAAATCAACTCTCCAGAACGTTGCTGAGGTCACCAATCCGAGCGTTGCTCTACACAATATTCTAAAAAACATTTTATTGGGAAATGTTAAACCAAAGAAAGGACCTGACAATGTTAAAGTTTTAGGATTATCTAATTATGTGTGTAAATTGGTATCACCCATCTTGACTAGTTATGGAATGAGTAAGAAAACTGGCAAAGCACAGCTACTCACAGAACTTGGACAACCAGCTGTTTTTGATTGTGGTAAAATTTTAGGTGATAGAGCATTTCTGATTGAAGAAGACAATTTATGCATCACCGGTTATGGCCGTGACAAAACTGGTAGCCTGAGATATTTATCTAGTACACTAGACATAATTAAAGATGTGAATAATAACGAGGAACGTCTTGTAGCTATACATGCTGATGGAGATGGTCATTGCTTAGTTCATGCTGTGTCTCGTGCACTCGTAGGAAGAGAGCTTTTCTGGCATGCATTACGTGTAAACTTAATGAATCATTTACAGGACAATATAGAAAAGTATAAAGAATTGTTCAAGGATTTTATTGATACCGATGAATGGAATGACATTGTAGAAGAATGTGACCCTCAGTTCTGTCCAAAAGATGGAGAACCGCTAGGTCTAAGAAACATTCACGTATTTGGATTGGCTAATGTTCTCAGACGACCAATCATATTGTTAGATTCTGTTGATGGTATGCAAAGTAGTGGTGATTATTCTGGTGTGTTTTTACCTGGACTCGTCAAACCAGAAGATTGTAAAGGTAAAGATGGAAGTTTAAACAAACCAATCTGTATAGCCTGGAGTAGTGAGGGCAGAAATCATTACATACCATTGGTTGGTATCAAAGGAAAACCACCACCTAAACTACCATGCTATATGATACAGAAGACATGGGGAATGCCACGTACACTGTTAGACAGATATATTGAATTAGATGAGTTTGGACACTGTATAGTTGGTGGGGATAAGTGTTTGTCTGACAAATATATCAGACATCTTGTATCTGCAATGGAAGAGGTATTTTATGAAAAACATGGCGTACAACAACAACTTGTAGCAGACGTACATCAGTTTATGTACAAGACTTCAGGTATTGTTGGTGTTCAGCCTGAAGAAGTATTAAAGACCACACAGAGAGCTGTTAAAGAGAACAAATTGTACCGATGTTTAACTTGTGAGGGTGTGATGGAGTATATTCTACCTCCAGAGTGGTTCCGTAAGGGAGGAAGCTTGTATAATCTTGCCATACAAACACAAGGAGCTCTAAAACCAGATAAAAAATATCAGTTTCCAATGCAAGGTGTTGTATGTACTTATGACGATGCAAAGGATGTCCTTGAACCTGACATGTCTAAAAGTCAACTGAGTATATGTTCCTTCTGTCAGGGAGCACATGTTCGCCTGATAAACGGAGATGGCAGCATTAAGTATGAAAATGGTGATCGTACAACAACACCAGCACCAAATGGTAGATGTACTTGTGGTTTTAAGCATTACTGGGAAGGCAAGGAATATGACAATCTACCAGAACTTTTTCCAATAAGCATGGAATGGAATGGTCAGGTGGTTTCAGAAAAGGTTGCCTGGTTCCAGTATGAGTCTGATGACTCTTGTAACAGTAATGTTTTTCAAGTAGCACAAAAAATAGTACAAAAACATTTTCCAGGAGAATTTGGGAGTGAGCGACTTGTACAACAGGTTGTTAACACGATACTACGTCGCACGGCTGCACAGAAAAAAGATCCAGAAAAAACAGTAGTTAATCCTTACAGTGATGAGGGTTTTTCTGCTGATACAGCATCAAAAATAATACTCACAGGCCATGCACACAAAACTTTACATAAAGAGGAATTGTGTAAAAGTGAGACGGAGAAACAATTGAAAAAACGGATCACATCAGAGGCTGCCAAACACCAACACAAGAAATCTATACCCTCTACCTCAGCACCAAAGTCTAGTCCTAAAAAGTCTAAATCATTTGATTCGGGTGTTCAATCAAAAACATCATCAAGTGATGTTACCATGACAACTTCAACGAAAAGTTCATCACCAAAGAAATCAGACGGAAAGAAAGTGAAGATAGCTACTTCTGATGGCAGACAGATGATGTTATCCCTTCCAGGGGAGGTAACCTTTAAGCAGCTGAGAGATCTTATAGCTGAACATGTCAGTCTGTCACCTGATCGTCAGAGGCTCAGAACAGGATTCCCTCCAAAAGAATTAAAACAACCAGAAAATGCTGATGAAATAATTCCATTATTACACGGTGATAAAATCAGTGTAGAAATTCTCCCTGACAAATCCATTCCCATGGAAACTGATGTCAGTAAAGACAGTAGTGGACATTGTAGGGATATAAAAAAAGTGGGTGAGGTTCCAAGTGGAAGCAGAAGTGTGAGATCATGGAGTAGTTTTGAAGAGGATGCACAAGGGAGTACTGAAGAAGCTCTTCTAAGAGCATTGAAAGCTACTGAAGGAGCAACTGACAGTATCGACTCATCTATTGCTAGTCTGGCAGTTATGTCAACAGTAACAGGTCGTGACCTCTGGACCTACGTACAGACAATGCCACACCTGTTCTCAGTAGGGGGTCTATTTTATAAACAGATGGAAAGAGATCTAGGTCTAGTTGAGGGAAAACACTGTCAATTACCTGCTCTACCAGGAAAGGTTTTTAAATACAATAGTCATGAAGACAGATTAGAGTTGTGCTTAGAACCACATGGACACTTTCCTGTAGAACCAAGAATAGAGGAAAAGGTCAAAGAAATGGTGGCTTCTGGGAAATTATCAGAAACAAGGTTTGGTAGCAGTGGAGCTATAGGACGACATAGTCCTAGGCTGCAAGCTTTTGCAGGTCAAGGTCATTCTTTACGATCTGCAGAAATTGAAAAGATGCCAGGAGATATTCCAGAGCCGATCGGCCACCACCATCATAAAAACCATCATCACCAAGTCCGAAAACTTCAAAACCTGTGTGATCCTGACCGACATGAGGAATCAATAAGTGAAGAATCTGAAGAAATTTTAGTTGATCTTCCTCAAGCACAGACACCTGATGTAGGCTACCAAAAATTGGGACCAGGCTACAGCGTTATCAATCCAGAGAATGTCAACCAATCAAATGAGAACCTACAATTGTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF19437	VCIP135_N	VCIP135 N-terminal	Domain	Interproscan
PF21403	OTU1_UBXL	OTU1, UBXL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323	Domain	OTU domain	Interproscan
IPR039087	Family	Deubiquitinating protein VCPIP1	Interproscan
IPR045827	Domain	Deubiquitinating protein VCPIP1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168	Biological Process	Golgi reassembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11861	VCPIP1, VCIP135; deubiquitinating protein VCIP135	EC:3.4.19.12	Peptidases and inhibitors	ko01002	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_44428-7.10 global RNA-seq network