Gene detail

Detailed information of Bpl_scaf_44217-3.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_44217-3.14	KNIRPS-RELATED PROTEIN-RELATED	Bpl_scaf_44217	284410	301914	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_44217-3.14

ATGGACGATCCGGATGTGCACGTGGAAAAATCTCCACTAGAGGAAGAAAAAGATCCAAGCCTGTTCCGAAATTTGAAATTAAAAAGGAAACGTTTAAATGACCTTATGGCGGCTGATAGTAGCCAGGGTGGTTCAGTTACGGAGGGTTCTGACAGTGGATATACCAGTAGTGAATGCTTTGGAAAAGATACCCAGACACAGATCACAGAAAGCCGCCATCGATCCTTTAAGTTGCCATTCAAGCATTACAAGGAAAGGATGCATTTTGGATCCACAGATGGTATAACGGTTTCAAGTGGAAATATTTCAACTAGTTTAATAGGCACGACTGAATTAAGTAGTAGTTGCTCGGAAGACCCAAAGATACCAACCACTGAACCAACAGAATTGTCTGTATCTTCTAATGTACCAGTAAGCTTAGCCTATGTTCCAAAGCTCTTTATAGCTGCAGGTTATGACAAAAAATTGGACCCAATGCTAGCACCGTGTCCAATAACCCTTGCTTCCACTGGTTCAGACAGTCCGCAAGCGTTGAAACAATCCCAAGTATTTATTCCAGCAGGTTATGTCCTAGCCATGGTTCCTGAAAGTAAAGCTTTTACTTTGACAGACCACGAAATAAAGCCTATTGTTCAAAATTCAACTAAACACTTATTAGTTGAAAAGTTGAAACAGGATTCAAATATTAAAAATGTAGTTGAAGTTCAAAAAGAAAAGAAACAGGATTATTCGTTTATTGATCATTATATTAATGGGGAATTTGTGTACAGCGGCCTTCTCAAAGATATAACTGATAGTGATAGGTCTAAATCTTCTAGTGAATCACAAACAGATGACATCCCAGACAAGGCACACGAACTCTGTGCCATCTGTAATGATAAAGCAACAGGGCTACATTATGGAATCATAACATGTGAAGGATGTAAAGGATTCTTCAAGAGAACAGTTCAAGGGAGAAGAGTATACAAGTGTTCAGGAAAAGAAGACTGTGAAATGAACCGACTGCAGAGAAACCGCTGCCAGTACTGTAGGTTTAAGAAATGCCTTAAAGTTGGTATGGTGTTAGCAGCTGTGAGAGAAGATAGGATGCCAGGAGGTAGAAACTCTGGAGCTGTATACAACTTGTACAAGGTAAAGTACAAGAAGTATAAAAGAAAGCAAGACATGACATCAGTTTACAAAGAAAAAGTCGGCAAGGTGAAAATAAGTGAAAATCAGCTCGTTACCAAATCTTTTGAGACTCTGGTTGAAAAATCTTTACCCTGCAATGTTTGTGTAAAAGAAATGGGTAAAACTGAGACTGTGAAACCATCAGAAATCGAAGATAAAACTAAGCATAGCGATTCGAGGACAGAGAATTTTCACAAAAGATGCACTTCGTGGGAATTACAAAGTTCTGTTGCTTCAAAAAATCAATTTCTTTGTCATATACTGAACTCAAAACTTGAATATTCAGAAAATACCAGAAATCAACAAGAATTGTTAAAATTAGAAAAAATGTTACATTCTCTTCCTCATGAACAGGAAGTGATGACAAGGCATGATGGGAAGGTGAAAGATGATTTGTTTTCAATGTGGAAATCAAGTGAAAAATCATCTGAAGAAATCATTGACCAAGAAGAATCATCGTGTAGTGCCGAAGGTCAAAGATTAATAAACGAGACTATTCATGAAGAGAACTACACTGAAAAATTTGGTTTCACGTATCAATGTTTGGATTTACCAAAGCATAAAGGAAGCGGAAAGTATGTTTCCATTGAACAAGAAAGCTCAAAATTTTGTTTGCAAAATAAAGATGAAGTGCTAAAAAGATCATACTGTGATTGGGAGGACGAAACAAAGTCTACAATGTTGTATTCTAAATTTCAAGGTCACAAAAGGTCAAGTACTTCTAGCTCAATGGGTTGCGTACCCAATTCACCAGAATCTATACAATTCCATCAACAGATTAATAAAAGTTTACCTTGGTCCCATTTTGTTTTTAATAAACCAAGTATGTTGAACGATAAAAATCCAAATTTAAATCTACTGCAGTGTATGAATACTAGCTTACCCAGTGCTACACAGAAAAGTCGTCTGAAGACCAGCGATCCAACAATAAAAGTAATGACATCAGAACCCTTGAAATCACATCCCAACCAATTGTATAAAGGATCAAAGTCACATGATACCTCAAATGTCCCAATTTCTACAAAACATTTAACAATATTAAAATCAAAGCCACATGATGTGTTCAAAAGTTACAAACATCTGAATGAATCTGAATCTTCAGATTTTGCTTCATGTATGTCGAATACCATGAAACAAAAACAAAAAAGCCTTGACCTTGAAAAAATTCCGGGAAATCAAGATATTGAGTATGATCCTACTAGTTTATGGGTCAATACAAACAAAATTTCACTGCCTCCAAATGTTGAAAAAATTTCAGGAGTGATGAAAACCGCTCAAAATCCAACTTTGAAAAAGTATAAAAAACGCAATGAGGAGGCAAAAAACAAATACCAAACAGATTTATTCAGTGCTGATAATGCAGTCTTTTCTACGGAGAGTAGATATGAAAGTCAGTCATGTTCACACGTAGAAATGTCTCGCCCAAAAGAGATTGCATCCCTAGATACCAGTAGTTCAGAATTTTTACAGGAAACTTTTTGTCATCCACCATCAATTTCATCCGTTAGTTGTGAAAATCCACATTTTTGTATGACCATGGTAGATAATACAAGACAACATCTCCATGGTAGCACAGAATTAACCCAGTGGGGTCAACAAGTTCATGTAAACGTGAAAAATTACACTGCAACCATTGAACATGATCAAGAAGAAAAATGTTACGAATATAAACAATATTCTGTAGATCGAAGCGAACTTGATTCCTATTTGCCGTCGCAAAACTCAACTGAACACCAAACCACGCTCCCTAAGCAGATGTCTGTAAAACCGATTAATAATCGGCTCATCGTGGAAGAAATTGTTGATTGTTTGAAATATTTGCATATTGAATTTGATATGGAAATGATAAATGACTCGGCAGTTAATGTGATGAAGAATATGTGTAACCTAGGCGACAGTATTGTCAGTAAGCTGGTATTATGGACAAGACATCTACCCTTTTATAACGAAATACCCGTTGAAGTTCATTCTCAACTTCTAACAGAAAAATGGCACAAGCTGCTTTTACTTGTCACATCCTCACAACAGGTACTCGCTAGTGATCAAAGTAACGTTACGTTTGAAGAGTTTCATCAACAAAAATTTACAAATGTGAAGTGTTGTTTAAGCAAACTATTTGACATACATATAGGAACAGACAAGATTAACTCTATAATGGTAGAGTTCATCAAACACATCTGTAAAGAAGAAAGGAACGAAGTAGTATCAAAAATCCATCTTCGTTACATTGAAGCCTTGAGTTGGTTTATCTCTTGTCACCATGGAAACAGCTCTAGTCGTCTGCACAACCTTTTGCTACAACTGCCAGAAATAGATACAGCGTCTGACATCTTACTCCAGACTAAAATGATTTACATTCCGTTCTTTCTTAATCTGTAA

Transcript

Bpl_scaf_44217-3.14

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	SF-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR050200	Family	Nuclear hormone receptor family NR3 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48092	KNIRPS-RELATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09185	NR6AN; nuclear receptor subfamily 6 group A	-	Transcription factors	ko03000	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_44217-3.14 global RNA-seq network