Gene detail

Detailed information of Bpl_scaf_44032-0.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_44032-0.1	RIBOSOMAL PROTEIN L13	Bpl_scaf_44032	3764	24410	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_44032-0.1

CTGTTTCCGGTCCCCTGTATTTCATTTTTGTGAGCCCCGAAGTGCTTCCTTTTCTCAACCATGGGTTTCACGGAGAAGCCCATCATTATTGATGCCAGAGGGCATTTAATGGGTCGTCTAGCGGCTATTGTGGCCAAAACTATATTGCAAGGTCAGCGAGTGGTTGTCGTAAGATGTGAAGGTATCAACATCTCGGGTAACTTCTTTAGATCAAAATTGAAATATCTTGATTACTTGAAGAAAAGATGTAATGTAAAACCATCTCGAGGCCCATTCCACTTCAGAGCTCCAAGTAAAATATTTTACAAGACAGTAAGAGGAATGGTACCACATAAAATTACACGAGGTAAGGAGGCTCTGGCAAGACTCAAAGTATTTGAAGGAATTCCTCCACCATATGATAAACAGAAGAGACAGGTGGTGCCATCTGCACTGAAAGTGCTTAGACTTAATCCATCAAGAAAGTTCTGTGATTTGAACAGACTTTCACATGAAGTAGGATGGAAGTACCAAAAGGTAGTCTCAACACTGGAAGCCAGACGTAAAGTCAAATCAAAGAGATTCTATGAAAGAAAGAAGAGCTTAGAGAACTTGAGAGAGAAGGCAAAGAAGAATGTTGCCCCTAAAATCAAGCAATATCAACAAGTGATTGAAAGCTATGGTTACCATTAAAAGACAATAAACCTTCTGGAATAGAGTTATTTTTGTTGTTAACATGTGTGACTGAATGTTGCACTAATTAAGCAGATTCTTCCTTGCTTAAAATCTTTAGTTAGGGCTATTTAGAGTGATTGTTATACATGAATTGAGAAGATGATGCAGTTGTTTAGAGCACTGACCAATGGCCAGTCAATTTCTCGTTCAGACATCATAGAAAGAAATACATATATATATTTTTCCCCAATAATATTGTAATTCAGGGGTTCGTTGTGGAACTTGTGATTAAGCTAATCATATGATTAGCCATAATTACATGATTCATTCCTAATCACATACTTAGCTACTGCAGTGATTAAATTTTGTTGCTGAGCTCTTTTTTATCAATGTATTAACTAATTATATTTAATCATTGAATTAGCTAATTATGTGAATTTGGCCTTTCTGTTTGTAAATCGATAGGGTGACTGATGAGTAAAGGTGGATTTATCAACACTACCCCAATTCTGGCATGGCCATTGTGACCACAATGCATTGGTAATTGTATTTATACAATTAAAAGATTGTGTGTTCTATTCCCTCCCATGGCAAGGTGTACTCCATACAGTTGACTCGTGGCATGTCAATGGTTTTCTCTAGGTACTCGTGCTTCTTCCACTAAAAAAACTCAAATATTGTTGAAAAATGAGGTTGAAGACCTGCATTGGAGAACCACCTCAGTGGTGTAGTGGTTGGAGTGTGATAGATAGCATATTTGAGCATCAGTTGGGTCAAACCAAAGATTATAAAATTTATATTTGTTTCTAATCCGCTAAGCACGTAACTTTAGGGAGAAACAGCAAAGATTGATTGGCTCAGGATAATGTGCCCGAGTGGAGCGTCATGTCTACCCGGGAACTGTTGTTTCAGTGAGCTAGCACTATAAAAATCTAACTATGGGTGTTGGTCTAGTACAAAGTGAGCATCATCTCTCATCGTATGTAACGTGATGTTGCTGAAAAATAGCTCGTTTAGCATTAAAGCAATCGCTCACTCTTGGAATGGGTCAATAAAATGGTATACTGCATATCCTAGGAGCCAGACTAACTACTACACAACAATAAAGTTCACATCACTTAACATTTAATTTAACACACTAAATATTGAATTTTGAACAGAAAGGACATGAATTCTATCCTTTTTGTAGATAACTGGAACATTCTCTCAAATATCTTTACCCAACTGTTGTTGAGTAATTTTAAAGCAAATATATTACAATTAGATATTCTCGTCATACTGGTAGTTGAAAGTTCATGTCTATGAAAAGAAAGTTTTAAACAGTGATGATGAACAAAGCGAACAATCACCTCTTGCCTTAAATCACTGAACACAAATTCGCCATGACATTGGGCTAGGCACAAAAATGTGGTGAGGTCAGACTGATTAATGGGATCCCAACACTCGTCTCTTAATAACTTGGGTATAACATTTCTATCATATGTGCCTATGTTTACTATACTTGGTGTACTGATTGTTATGCAATGAAGTCACAACTATGTGTGTACCATGCTTTATCTTCTAAGTGATGGAAAATCAAGAATCCAATGGACAAGTTCATCATTGATAAAATGTCTGTTTTTAATAAAGGTTTATTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00572	Ribosomal_L13	Ribosomal protein L13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005755	Family	Large ribosomal subunit protein uL13, eukaryotic/archaeal	Interproscan
IPR005822	Family	Large ribosomal subunit protein uL13	Interproscan
IPR023563	Conserved_site	Large ribosomal subunit protein uL13, conserved site	Interproscan
IPR036899	Homologous_superfamily	Large ribosomal subunit protein uL13 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11545	RIBOSOMAL PROTEIN L13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02872	RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae	-	Ribosome	ko03010	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_44032-0.1 global RNA-seq network