Gene detail

Detailed information of Bpl_scaf_43972-3.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_43972-3.13	CITRATE SYNTHASE	Bpl_scaf_43972	314187	351326	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_43972-3.13

ATGTTAAGCAAGGTTCTGTTTGTATTATTTGTGGGAAGTGTTTGTGCTTTCTGGGATGTTGATTCTGACAATTACAGAGATTCACGTGTTGACAACCATAGAGATTATAATTCAAACGACGATCTCCATGACAACGGTTCTGATGACTATAAAGATAATGATTTAAATGATGATCTCTATGATAACGATTCTGATGATAAAAACATATTCCCAATGGGAGGATTCGGTAGACGAACATGGGGACAGCAACGATCCTTTGGTTTTCAGCCACGAAGAAGACAGCAAGTTTCCAGATTTAATCCCTTTAATAGAAGATCAGGGAATTCTGGTTCTTGGCGACAAAGACAAAATTTATGGAATTCTTTCCAGACTCAACCCCAGCGCCGAGTACAAAGTCAACCACAACGTCGAGTTCAAAGTCTACCCCAACGCCGAGTTCAAAGTTTATTCCAGCGCCGAGCTCAGAGGCAACCCCAACGCCGAGCTCAGAGTCAACGCCAGCGCCGAGTTCAGAGTCAACCCCAACGCCGAACTCAAAGTCAATTCCAACGCCGTGTTCAACGTCTACCTCAACACCAAGCTCAAAATCAACCCCAACGCCGAGTTCAAAGTCAATCTCGTTTCAACAGACCGACTCATGAGGGGAATTGTTTGTTAGTCAACTTACACAGCAGAAATCCACGATTTCCAGTGTTTCATCCAGTATGCGCAGTCATACCCGGTGAACAAAATCAGCCCAAAAAATCATTGAAAACTTTAGATACATTTTACCATGGCTTTGTTGAAAGGAAACCAGTACTACTCCCAGCATCCACAGTAGGAGCAAGACAATCCTCGTCAACTACAAATTTGAAGGATGCTCTTGCAAATTTAATCCCAGAAAAACAGAAAGAAGTTGTAGCTCTGAGGAAAGAGTATGGGAATAAAAAAGTTGGTGAAGTCACCCTGGACATGATCTATGGTGGTATGAGAGGGATTAAAGGCTTGGTTACAGAGACATCAGTCTTAGATCCTGATGAAGGCATTCGGTTTAGAGGTTATAGCATTCCAGAATGTCAAAAAATCTTACCAAAAGGTAACGGAGGCAAAGGAGAGGAACCACTCCCAGAAGGACTGTTCTGGCTGTTATGTACAGGAGATGTCCCAACACAGGCACAGGCTGATGCAGTTAGTGAAGAATGGAACAAACGTGCAGCTCTACCTAACCATGTTATAACAATGCTGAACAACTTCCCATCAAATCTCCACCCAATGTCTCAGTTCAGTGCAGGAATTACAGCTCTTAATAGTGAAAGTAAATTTGCCAAAGCTTACTCTGATGGTGTGAAAAAGTCATTGTACTGGGAGTATGTGTATGAAGATTCTATGGATATGATTGCTAAGTTACCTACAGTAGCCTCTATTATATATAGAAATCTGTACCGTGAAGGAACGGCTGTACAGGCTATAGATAACAGTAAAGATTGGAGCTGGAACTTCACTTCTATGTTAGGCTTTGATAATCCAGAATTTGTAGAATTAATGAGGATGTACTTGACAATACACAGTGACCATGAAGGTGGCAATGTTAGTGCTCACACAACACATTTAGTAGGTAGTGCTCTATCAGATCCTTATCTTAGCTTTGCTGCTGGAATGAATGGATTAGCAGGACCTCTTCATGGATTAGCCAATCAGGAAGTACTTGTATGGTTAACAAAAGTACAAGAAGATGTCGGAAAAGATGTATCAAAGGAAAAATTGAGAGACTGGGTATGGAATACACTAAAATCTGGTCAGGTGGTACCAGGCTATGGTCATGCTGTGTTGAGAAAAACAGACCCAAGATACACATGTCAAAGAGAATTTGCTCTGAAGAAACTTCCCAACGATCCACTATTTAAACTGGTCTCTATGATATATGAAGTTACACCTGATATATTAATAGAACAAGGCAAAGCTAAGAATCCATGGCCGAACGTAGATGCCCATAGTGGTGTCTTACTTCAGTACTATGGAATGACAGAGATGAACTACTACACAGTGTTATTTGGAGTTTCTCGTGCTTTGGGGTGCATGTCTTCACTTATCTGGGATCGTGCCATGGGACTACCAATCGAAAGACCAAAATCTTTTGATACACCATCATACAGAAAATTAGCAGAAAGTTCCAAATAA

Transcript

Bpl_scaf_43972-3.13

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00285	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002020	Family	Citrate synthase	Interproscan
IPR010109	Family	Citrate synthase, eukaryotic-type	Interproscan
IPR016142	Homologous_superfamily	Citrate synthase-like, large alpha subdomain	Interproscan
IPR016143	Homologous_superfamily	Citrate synthase-like, small alpha subdomain	Interproscan
IPR019810	Active_site	Citrate synthase active site	Interproscan
IPR036969	Homologous_superfamily	Citrate synthase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11739	CITRATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004108	Molecular Function	citrate (Si)-synthase activity	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101	Biological Process	citrate metabolic process	Interproscan
GO:0046912	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01647	CS, gltA; citrate synthase	EC:2.3.3.1	Carbon metabolism	ko01200	PMID: 28812709
			2-Oxocarboxylic acid metabolism	ko01210	PMID: 28812709
			Biosynthesis of amino acids	ko01230	PMID: 28812709
			Citrate cycle (TCA cycle)	ko00020	PMID: 28812709
			Glyoxylate and dicarboxylate metabolism	ko00630	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_43972-3.13 global RNA-seq network