Gene detail

Detailed information of Bpl_scaf_43244-0.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_43244-0.6	DEHYDROGENASE RELATED	Bpl_scaf_43244	135252	143447	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_43244-0.6

AATTAATCATCTGATAAATAGAGAAAACACCTGTCAGATGACAGCACCACTTACAAATAACTTCTTTTCAGTTCTTGTATGACATCGATTTATTGTCTGTTTTATAGGTCATCAACTCAGCAGCAAAAACATTTTACATGTCAGCCGGTGAGGTTCATGTTCCAATTGTATTTCGAGGACCAAATGGAGCAGCCGCTGGGGTAGGAGCTCAACATTCTCAATGTTTCGCATCATGGTACAGTCATTGTCCAGGGCTCAAAGTACTCTCTCCTTTCTCAGGAGAAGATTGTAAAGGTTTATTAAAGTCAGCCATTAGGGATCCAAATCCAGTGGTATTTTTAGAAAATGAAATTATGTATGGTGTATCATTTGATATGTCAGATGAAGCCATGTCTGAAGATTTCCTCATACCTATTGGAAAAGCTAAAATAGAACGACCGGGTAATCATGTAACATTAGTGGCCTTTAGTAGATATGTAGGACACTGTTTAGAGGCAGCCAATGAATTAGCAGGACAGGGTGTAGAATGTGAGGTAATCAATTTGAGAAGTATTCGTCCAATGGATGAAGAAACGATAGTAAAATCTGTGATGAAAACGAATCATTTAGTTACAGTAGAGGGTGGATGGCCACAGAGTGGAATAGGAGCTGAAATCTGTGCAAGAATCATTGAAAGTCAAGCCTTTAATTATTTAGATTCGCCAGTATTACGAGTGACAGGAGCAGACTTACCAACGCCATATGCTAAGCAATTAGAAGATAATTCTTTTCCTCAAACTCACAATATTGTTGGAGCTGTGAAAAAATCATTAAATATTTCATAACAATACTCTTATTAGGACAATATAGACAAATAAAAACTGAAAATTGTCACAAGACATGTTATTTATTAATGGAATGAAATGGTAGTTAATTTTAATTTTAAGTTGTGATAGAACATGAAGTTAATTATCATACATATGAGTTTTCACAAAAATATATGATTAAACTATTTTTTTTTAATATGATCGCAAATATTTTTAGTCATATTGTGGTATTACTTAAGTTCTACTTAAGTTTTAACACAAGGATTCTTGCAATAGAATCAAGCTCAGATACCCATTTCCAAACAAGAGGCCAAAAGTGCCAAAATTGTTTAATTGCTGCGGTCGTACCAAGTCATCATCAAATGGTAGCTATTTTTTTTATTTTATTGAGAAACTGTTTACTAGAAAACTTTCACAATGGTTTAAATTTTTTATACTTGGAATAGAGACACGATTAAGTAACTAATAAATTATGGCTAAATATATTACTTCTCAATACGAAAATGAGCCGATGCCATTGGTCAGTCATTTAGTTTGGTGTAAGGAAGTCCCACAATGCTATTTTTTCTGAAGTGATGATTAACCAGTCAATTTAATTGGTCACATAAAAGTCTCCTAATATTCAGACATACAGGTATACATCTTTCAGCAAACTTTCTATAAAAGCTAAATACTTCTTAATATATACAATTCTACATTTTCAAAATAAAAGCAAATGTTGGGAACAACACTTCAAGTGCTGTGAATTGATTTGTGAGTTAAATGAATAATAAACAATTTTTTGTAAAAATGTCTGCCTTGATGGCTTTTTAAAAGCAATTGCTGATTTAATACCCCATTTTCATTTATATGGAACATTAAATGAAGAATTAAAATTTTTCAGGGCTCAATTACCTTACATCCATATCAGTAGTCCTCAAATATTCATGATGTCACACAGGTTGACCAGAAATTATTGATTTCAAAATTTTTAGCATGTTCCTTCCAATATAAAATTCACATTTTTAAAACATTGAAAACAAAGGTTTGAAATTTGCAACAAATATTTCAACTGACATAAATCAAATATTATCATGTATTTACTAATAAACAGTATGTAAGGTTTTATTTTGGTTTGTTTACTAATACTCAGTTGTAACTTTCACATGCCACAAAGTGGTACTCAGAAATAATTATTTCATAATAGACATATAATATAGAAATGTGCATTTTGTGTGGGAAAAAAAATCCTGATACCTGGTGATTTTACATTTTTTGTCCCCCGACGCTTTGTCGAAGGGGACTATAGAAATGGGTATCGTCCGTCCGTCCGTATGTCCGTCCGTGTGCTTTTTGGTTTCCAGATGATAACTTGTGAATGAAAAGTCAGATTGAAGCTAGGTTTGGTATGTAAGTGTATCTTATGAATATCTAGGTCAAGTTCGATAATGACAATTTTTCGACTATTTTTACTAGAGTTGTGCCCCTTTTTATACCTCAAAATTGCTAAATATTTGGTTTCCAGATGATAACTTGGGAACAAATAGTCAGATTGAAACTAGGTTTGGTATGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR009014	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR027110	Family	Pyruvate dehydrogenase E1 component subunit beta	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR033248	Domain	Transketolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11624	DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004739	Molecular Function	pyruvate dehydrogenase (acetyl-transferring) activity	Interproscan
GO:0005967	Cellular Component	obsolete mitochondrial pyruvate dehydrogenase complex	Interproscan
GO:0006086	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00162	PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit	EC:1.2.4.1	Carbon metabolism	ko01200	PMID: 28812709
			Glycolysis / Gluconeogenesis	ko00010	PMID: 28812709
			Citrate cycle (TCA cycle)	ko00020	PMID: 28812709
			Pyruvate metabolism	ko00620	PMID: 28812709
			HIF-1 signaling pathway	ko04066	PMID: 28812709
			Glucagon signaling pathway	ko04922	PMID: 28812709
			Central carbon metabolism in cancer	ko05230	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_43244-0.6 global RNA-seq network