Gene detail

Detailed information of Bpl_scaf_43097-1.21 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_43097-1.21	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4	Bpl_scaf_43097	175060	202810	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_43097-1.21

TCACTTCCAAAATGGTTCTCGAGAGTACAATCGTTTGTGTTGACAACAGTGATTATATGAGGAATGGAGATTTTGTTCCTACAAGATTACAGGCTCAGCAGGATGCTGTCAACCTTGTATGTCATTCTAAAACCAGGGCAAACCCAGAAAACAATGTTGGATTGCTAGTTATGGCAAATGTTGAAGTACTGGTTACCTTGACAACAGATGCTGGACGAGTTTTAAGTAAACTTCATCAAGTTCAACCAAAGGGAAATATAAGATTTGGAACAGCATTAAAAGTAGCTCATTTGGCTTTGAAGCACAGACAAGGAAGAAATCATAAAATGAGGATAGTATTCTTTATTGGTAGTCCTGTAGAGGATGAAGAAAAAGAGCTAGTTAAACTTGCAAAAAAATTGAAGAAGGAGAAAGTTCAAATAGATATAGTTAACTTTGGAGAAGAGGCATTTAATACAGACAAGCTGACATCAGTAGTAAATACAATAAATGGAAAAGATGGGACAGGATCACATTTAGTAACAGTACCACCAGGCCCTTTGTTATCAGAAGCCCTGATTAACTCCCCAATCATAGTGGGAGAGGATGGTTCAGGGGCAGGATTACAAGCTACAGGCTTTGAGTTTGGTGTGGATCCCAATGAAGATCCAGAACTGGCATTGGCTTTGAGAGTGTCCATGGAAGAACAAAGAGCTAGACAAGAGGATGAAGCCAAGAAAGCTATGGAAACAACAGCAACAGAGCCTGCTCCTGTACAAGAAACTGGCACAAATGATGAAGCAATGCTAAGACAAGCACTGACAATGTCTCTTGGACAAGAGGAAGAAGCTCCAACAACACCAAATGTTCCTAATTTTAGTTCATTAACAGAAGAGGAACAAATAGCTTATGCCATGCAATTGTCTCTACAAAATTCAGCTGACAACACGACAGGGAATACACCTGCCCCTATGGATATTGATGATGAGGCTAAGCCTCAAGAAAAGTCAGAAAAAGGAGAAGCTTCTGGTGTTGATGAAGATTATTCAGAAGTGATAAATGACCCATCATTTTTACAAAGTGTTTTAGAAGGTCTACCAGGAGTTGATCCTCAAAGTGAGGCTATACAAAATGCTATTAGTTCTGTGAAGGACGGATCTAAAAAGGACAAGACAGATAAAAAAGAGTCTAAATAATATGTTGATAATCTTATGTTTCAATTTGATATAAATCACAAATATATGATATCATTGCTACTTCTATAAAATGTCATTTGTTGATGATATTTAAGGCTATTTCATTGAAAAGTTTATTTTGTGATAATTTTTTTTTATCAATATTTTTTTTTGGAAATTTTCCCTTTGATTTTTACACATGATAATATCTATTATCAATAAACAAACATTTTATCGTTGATTTCTAATGTGACGTTACCTTGACAAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACATTACCTTGACGAATCCTCAATATACTATTGTTGATTTCGAATGTGACGTTACCTTGACGAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACGTTACCTTGACGAATCCTCAATAAACATACTATTGTCGATTTCTAATGTGACGTTACCTTGACAAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGATGTTACCTTGACCAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACGTTACCTTAGCGAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACGTTACCTTGAAGAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGATGTTACCTTGACGAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACGTTACCTTGACGAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACGTTACCTTGATGAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGATGTTACCTTGACCAATCCTCAATAAACATACTATTGTTGATTTCTAATGTGACGTTACCTTGACCAATCCTCAATAAACATAATATTGTTGATTTCTAATGTGACGTTACCTTGACGAATCCTCAATAAACATACTATTGTTGATTTTTAATGTGACGTTACCTTGACAAATCCTCAATAAACATACTATTGTTGATATGTTTTGCTTGAAATTGACTTGAGGGGTGGGGCATATAAAATGATTGTTCCATTGGTATGGTTTTATAAACAGTTGAGTTTACTGATAACAAATGGTCAATAATTTTATGACTTGACTATGTATTATTTTTGGTTTATAGGTTTATATTATTTCAACTGTTGATTCCTATTTTAATAGAATTACAGAAATATTACCCGATATTTCTGATCTGTATAGCATACCCCAAACATGCATACTTTTTCCCCTGTTAGTGATAACTTTCAATGGAATAGCCTTGATGTACTTGAAGAAAGAATTTTAATGGAATATTCTTGATGTATGTGACAAAAAGATGGTTTTGTTTGCAGGACAGGATTTTTTGTGTGTAAATGACAAGATAATTTGATGCTGTATCAGGAAGAGTGTATGAGTGGCAAAAGTATATAAATTATTCATACTATCATTTAATATTTTATGAATTAAAATCTGTTCGTGCATAATTCTTTTATTTATAATGGCTCTATTAACCC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02809	UIM	Ubiquitin interaction motif	Motif	Interproscan
PF13519	VWA_2	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR049590	Domain	PSMD4, RAZUL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10223	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008540	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03029	PSMD4, RPN10; 26S proteasome regulatory subunit N10	-	Proteasome	ko03050	PMID: 28812709
K03029	PSMD4, RPN10; 26S proteasome regulatory subunit N10	-	Epstein-Barr virus infection	ko05169	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_43097-1.21 global RNA-seq network