Gene detail

Detailed information of Bpl_scaf_43088-1.37 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_43088-1.37	SEC3/SYNTAXIN-RELATED	Bpl_scaf_43088	149796	193455	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_43088-1.37

ATGACAGCTATAAAACATACCCTACACAGGGATGTGTTCCTCCCTAATGATGAACAACTAGTATGTTTTGTTCATGTTACCAAAGTGGGGAGAAAGAAGAAAAATAGTTTTCTTTGTGCTGTTTTATCAACAGATATCACCCCTATACAACCTAGAGTTTATCAAGTTAAAAAGTCAGACAAAGGAGAATCGTATAAGAAAAAACTTACCTGGTTGTTAAGAGAACTCAAAACTGTGGATGGAAAAAGTACTAATAAGGAAACTGCTGAATTTGATCTTCATTTTGAGAAAATATTTAAATGGAGTGCCAGCAGTGTAACTGAAAAAGAAGCATTTCTGTCTACTTTGTGGAAGTTGAGCCAGAGATATCTGATTCAGAAGCCAGACTTTGTCAATGTACCAAGACATTTACTTAAAGAAGTTACTCATCAAACAGAACATGTGACACAAGCAGCAGACGACATAGAAGTTTTACAGGAAGATTATCAAGCTTTGTCATCAAAGGAAGAGTCTGACCTTGACCATCTGATGTCTGAATGTCAGGCAGCCATTAGTAATGCTGAAGCATTTGCTGAAAACTTGTCAAAACAGCTGTCTGTATTAGATGGGGCCAATATACATTCCATTATGGGATCAGAAGACCAAGTATTAAATCTGATGAGATTATTAGACGGTGGTATAAACCAAGCAGAGAATATAGAAGACAAACTAGACTCTTATGATAAAATTTTACAGAATGTAAAAGATCAGATGGAAGTTATGAAAGATAAAGATACTCTTATAAAAGTTAGGAATCAGAATCATCAAAAATTACTGGAGGAACTTGATAATGTCGTGACACAGCTGGACCTCGATACAAAACATTTGAAAGCATTACAAGACGGTGATTTGTCAACACCCAATGGAATTTATGAGTGTACATCAGCAGCCTTGGCACTTCATAAATGTATTAATATTAACATACACCCAGCTTTGACTAAAATGGCTGCTGTAGAAGAACAACAGAAGAAATTTACCAAGTTTGCCACAGGTTTTGCTAAAAGACTGGCACATCATCTGAATAATTTGTTTATTCATCAGGGTAATGAGATGGGAGAGACTTTGTCTAGACAAGCAGCAGAGTACAAACTATCACCACATTTCACCAGACATAGAGATCTGACTCCATATGCTGATTTAATGGCATGGCTTAAAGCAGCAGATATAAAGACTTTTACAGAACTGTCAAAGGTTTATACAGCAAGTTTAAGTAAATTATACAAGAAAGAGATGGAAGACTTTATAGAATTTTCTAAGCAGAGACTTACCTCTATTCCTGAAAGAGTCAAATTAGACATGGTCTGTACAAAGAAAGTGAAAATAGGTGCACAAGCAGCTTCAATGTTGTCTGGATCATCTAACAGTTTACAGAGATTTGAAGCCAGTAGAAAACGATCTGGTTCCATGCAGAGTGTGGATTCAATCACAATATCAATGCACGGCTCTGACGCTGACTTAGCTAACAGACATTTCTTTGATCAGGTGCTAGATAAACTTCTGAGTGAGTTAGAACCGTTTTGTTTGGCAGAACAGGATTTTTGTGTCAGGTTCTTCCATTTGATTGGTGATTCAATGAAAGATCAAGAGAAGGAAGAAGATAATGCAGAAACAAGTGATATTTGGATGCCAAGGAAAGAAATCCCTGTCATAGAGGAGTATTTTATGGAAAATTTAGGTCAAGGTTTATATCAGAAACGTAGAACTGAACTAATTTACTCTATGTATATGTTAGTACGGATGAGTCAACATGTAAACAATGCCCAGGACACAGGGTCGTTCCTCAGTGTTACATTTGCCAGTTGTCTTGTCAAGATCAAGAGAAACTTTGATAAATTTATCCAAAACCAGATAGCTGCCATTGAAGAATATAAAGTACAGAACAAAAAAAGATGTGGAATCATAGGATTTGTACATAACTTTGGGGAATTTGCTACTCAAGCAGAGAGTATATTTAAAGGATCAGACAGACACACCCACCTAGACAAATCTTATGTAGTCCTAAAAATTTTCATCATATGTTTTGTAAGTATTTTTGCTTTTGTACAAACTGTTTTATCACAACTGAAGATACCATGTTTAGATGGAGACAGGAAAGAAGCTAAGCAAGTTTACCAAGATAATCTGTATGCTTACACTACAAATTTATTAGGAAGACCACTAGAGAAAATACAGGTAAAGAAAGGGTTGGATCACGTGTACAAGAAAGTAGAAAAACATCTATGTGAAGAAGAAAATCTGTTACAGGTTGTATGGCTTTCTATGCAGGATGAATTTATTAAACAGACCAAACATTATGAGGACTTAATAAACAAGTGTTATCAAGACTCTGCTATTTCATTAGCTTTTAGTGTCAGTGATGTGCTACAGTTCTTTTCAGAGATTGCACAGGCACATTGA

Transcript

Bpl_scaf_43088-1.37

TGTGGATGTGGCTTGTTCCTTCTGGACCTCGATGAAGGTCGGGGATGTGTAGGTTGATCTAGACATTTTTCATGAAAATGTGAATTATAAGTAGTCGGATGTCGTGCTTGAGCAGACCAAACTCGAGTCGCCTCAGCTTTTATTCGTAACAGTTCATCTGCATCTGGCCCCGGATTTCTGTATAGTGCAAACTCGCGTAATTTTGTTTTGTCAAGGGGTAATGTTGCAGTTTTTGCCCGTCTCAGATTTGAAACAGGGTTACCGAAGCCGGGGAGAATATGTCCCGTAGCCATCGCTGTAGTTTCCTAAATTAAACAGTTCAAGTCATTAGAATAGTTAAATGGATGATCAGAATTTTCAATAATGAAGGAACTTGTGCTGTAAAACTATGTTAGTTTACCCGCACCAGGCAACAAGAACTAAACCGGAAGCGGAAGTAGGACTGAAACTAATTTCCGGAATAAAATGAAACCCTGAAAATTTTGGAAGCTGCTGAAACCATAATTATCTCAACGATGTAGATCATATAAGTCATTTGTTATCGATCTTCAGTTTTAATAGTATTTTCTGAACACATTTTTTTGTAGCAAATGTGATATATTGGTACCTAGTACATTATGACAGCTATAAAACATACCCTACACAGGGATGTGTTCCTCCCTAATGATGAACAACTAGTATGTTTTGTTCATGTTACCAAAGTGGGGAGAAAGAAGAAAAATAGTTTTCTTTGTGCTGTTTTATCAACAGATATCACCCCTATACAACCTAGAGTTTATCAAGTTAAAAAGTCAGACAAAGGAGAATCGTATAAGAAAAAACTTACCTGGTTGTTAAGAGAACTCAAAACTGTGGATGGAAAAAGTACTAATAAGGAAACTGCTGAATTTGATCTTCATTTTGAGAAAATATTTAAATGGAGTGCCAGCAGTGTAACTGAAAAAGAAGCATTTCTGTCTACTTTGTGGAAGTTGAGCCAGAGATATCTGATTCAGAAGCCAGACTTTGTCAATGTACCAAGACATTTACTTAAAGAAGTTACTCATCAAACAGAACATGTGACACAAGCAGCAGACGACATAGAAGTTTTACAGGAAGATTATCAAGCTTTGTCATCAAAGGAAGAGTCTGACCTTGACCATCTGATGTCTGAATGTCAGGCAGCCATTAGTAATGCTGAAGCATTTGCTGAAAACTTGTCAAAACAGCTGTCTGTATTAGATGGGGCCAATATACATTCCATTATGGGATCAGAAGACCAAGTATTAAATCTGATGAGATTATTAGACGGTGGTATAAACCAAGCAGAGAATATAGAAGACAAACTAGACTCTTATGATAAAATTTTACAGAATGTAAAAGATCAGATGGAAGTTATGAAAGATAAAGATACTCTTATAAAAGTTAGGAATCAGAATCATCAAAAATTACTGGAGGAACTTGATAATGTCGTGACACAGCTGGACCTCGATACAAAACATTTGAAAGCATTACAAGACGGTGATTTGTCAACACCCAATGGAATTTATGAGTGTACATCAGCAGCCTTGGCACTTCATAAATGTATTAATATTAACATACACCCAGCTTTGACTAAAATGGCTGCTGTAGAAGAACAACAGAAGAAATTTACCAAGTTTGCCACAGGTTTTGCTAAAAGACTGGCACATCATCTGAATAATTTGTTTATTCATCAGGGTAATGAGATGGGAGAGACTTTGTCTAGACAAGCAGCAGAGTACAAACTATCACCACATTTCACCAGACATAGAGATCTGACTCCATATGCTGATTTAATGGCATGGCTTAAAGCAGCAGATATAAAGACTTTTACAGAACTGTCAAAGGTTTATACAGCAAGTTTAAGTAAATTATACAAGAAAGAGATGGAAGACTTTATAGAATTTTCTAAGCAGAGACTTACCTCTATTCCTGAAAGAGTCAAATTAGACATGGTCTGTACAAAGAAAGTGAAAATAGGTGCACAAGCAGCTTCAATGTTGTCTGGATCATCTAACAGTTTACAGAGATTTGAAGCCAGTAGAAAACGATCTGGTTCCATGCAGAGTGTGGATTCAATCACAATATCAATGCACGGCTCTGACGCTGACTTAGCTAACAGACATTTCTTTGATCAGGTGCTAGATAAACTTCTGAGTGAGTTAGAACCGTTTTGTTTGGCAGAACAGGATTTTTGTGTCAGGTTCTTCCATTTGATTGGTGATTCAATGAAAGATCAAGAGAAGGAAGAAGATAATGCAGAAACAAGTGATATTTGGATGCCAAGGAAAGAAATCCCTGTCATAGAGGAGTATTTTATGGAAAATTTAGGTCAAGGTTTATATCAGAAACGTAGAACTGAACTAATTTACTCTATGTATATGTTAGTACGGATGAGTCAACATGTAAACAATGCCCAGGACACAGGGTCGTTCCTCAGTGTTACATTTGCCAGTTGTCTTGTCAAGATCAAGAGAAACTTTGATAAATTTATCCAAAACCAGATAGCTGCCATTGAAGAATATAAAGTACAGAACAAAAAAAGATGTGGAATCATAGGATTTGTACATAACTTTGGGGAATTTGCTACTCAAGCAGAGAGTATATTTAAAGGATCAGACAGACACACCCACCTAGACAAATCTTATGTAGTCCTAAAAATTTTCATCATATGTTTTGTAAGTATTTTTGCTTTTGTACAAACTGTTTTATCACAACTGAAGATACCATGTTTAGATGGAGACAGGAAAGAAGCTAAGCAAGTTTACCAAGATAATCTGTATGCTTACACTACAAATTTATTAGGAAGACCACTAGAGAAAATACAGGTAAAGAAAGGGTTGGATCACGTGTACAAGAAAGTAGAAAAACATCTATGTGAAGAAGAAAATCTGTTACAGGTTGTATGGCTTTCTATGCAGGATGAATTTATTAAACAGACCAAACATTATGAGGACTTAATAAACAAGTGTTATCAAGACTCTGCTATTTCATTAGCTTTTAGTGTCAGTGATGTGCTACAGTTCTTTTCAGAGATTGCACAGGCACATTGAAATTCACAAAACATATATATATTTTTATGTATGGGAAATATTTGATTTAAAGTCTTAATATTATTAGTTACACAGTGTGTTAGTGACCTAATACGTTATATACGGGGTCAAATTCCATATGAAATTTACTGACCCCGTATATAACGTATTAGGTCACTAACACACTGTGTAACGAATATATCTTACCGACTACCCTTTGGATTTGAAGTTCTGAGTTTTTGTTCTTACTTTTATGAGTCTATACTCAAGAATTCATAAAATAATTGAAAAATACAAACTTTCGATATTTTATATCACAGAAAAATGTCACATAATGTTTAGCAAGAACAGTCAAAATTTTCACAAAAACAATAAACTGTTTTCAAAACCCTGGAAATAATGTTTAAAGAACACAAGTAATTTCCCAAAATACATCAAGTCAACTATTACTTATTAATGGTAATTTACTAACCCTGTATGAAATTTACTAGCCCTGTATGAAATTTACTAACCCTGTATGAAAAACATACAAGAGGCTCAGAGCCCTGTATGAGTTATACAGGGTGTCCACGTGTTCACGCTAAGCCAATAATTTTCTTACATTTATGTAGGAGGTAAGATATATACTGGTAATACATACAACATTTTGTTTAAAATGTGAGGTTTACAAAGTATTTCTCATTTGTTTCGAGTACAAAATAAGTTTGATACCCACAACAATGTGTGTACTGTTTGTCTTACACTGTCTTATATTTTATGAAAATAATGTGTTATCATTAAAAGACACATTTTAGCATAAAAAGATCAATTTATTACAAATGCACTTGAAATATTGAGATTTCAAGTGGTAGAAATACAAGACATTATTATGTGATATAGTAAAAACTATATACAGTGATGGGTTTATAAGATTTGTGTGTCTTCCCATTATCTTACCAATAGATTACTTATTATATGATTATAATGTTTTCCAGTCTAGTGCTTTTATCGTAGGGTCTAGATATTTCTTATACTCATCAATGGAGAAAATATCAGAAACAATGAACAAAGCTACCAGTGTGCCAAGAAAGTTAGGGAGACACTTATTTCATTTACCAGTAATGTACCAATATATTTTTCATATACAATGTATATGGTTTGTAAGAGAGATAACTGTTGTCTACAGCTGTTGTAACTGTTGAGACTGTATGTTACCAAAATACAATTTAATCAAATATGATTAGTGATAAAGTCAGTTATTTTCAATATTAAAAATATTTTACACAACTGATGAGGAAAAATCACCAAAAGAAAGAAATTCATCAGATGGCCATAAAATGTTCTATTTAAGCTGAATTTCTGCATGTAGCTGTGTGATAATGAGTTATTTAACATACAGTTAGCTCAACGCGAATGGATTCTCTATCGTTTCCCCCCGATTTCGGTGAATATCGGTGCCACCGTTAATTTCAGATTTTGCTCCCAAAATCCTCCCAAGCTGGTCCACCCAACAGCGCATGGTTTATGACCCTCCCAAATGGTTTATGGTCGTCTAGAGTAATAAAAATGTTTAAATGCCTCCTATAGTTAATCTGATTAGGATGTCGCGTGGAACTTTAAATATTTACAATAGATCGTTGTCCCCAAGTATTTTGATCGTTTTTTCCAAAATTTACCTTTTGTACTCGTGCGATTTTTTGTGTAATACACAAAAGAATTTGCTTCGCTAGTGTATTTCAAATCAGTCAAAACCTGAACATACACGATTGATGCATTGATTTTCTAGCGCCTTTCACATTGTAACGGCATTTTTTGATAATTTAGGGTGTTGGTCTGCAGAAGCTCCAAAGCTCAACTCGACGGGGTACTGACAAATGGTCAATGTCCATACCCCTATACGAGATAGTGATTCCAAAGAATGTTACTATTTTTATCACAAGGGATGTCCCGCGGAACAGTCGGCATTTTAAATAAAAAATTTAAGTCAGCACAAAATATTTTAGCCTGCTGAAAAAAGACAAGTCGGTAGTGCAATTTTCAACGAAATAATTTCATCACAAATTTTTATTAGCACCGGATTCGAATATATCGCTCTGACTATGCCCATGCCTGATGGGGTACTGGCAATTGACAAAAGTCCATACCCCTATACGAGATATTGATTCCGAGAATGTTACTGTTTTTAGCAAAAGGGAAAACAGGCGGAACCAGGGAAATATTATGATCTCTGCCAACATATGTTTTTATTTTAATATTTTTTACTGATGACAAATATTATAAATAGTCACACAAACGGCAATTATGCTTACCTGAGTTATTGATTTTTAATAACACCTGTCTGTATCCCGTGGAGAAAGCGGCATAGATCAATGGGATTAAAACCATAAATTTCACCGCGGCCCACCGATTCAGGTGAGAAACCCTGCCGATTTATGACCAAATGCTCCAAAGATACACCAAGATTTTTTCGGTGGATATCGGTGTATTTCAGTTTTACACCAAGAAATTCCACAAATTTTGGAGTGGGAGAATCCATCCTCTGAGCTAACTGTATATAACCTGGTACACTCCCCTACCTAAGGTTATAGGAACCACAGTAGGTTCATAACCACCTCTACTAACTGGGTTAGAAAGGATCTCTTTTAGCTCAGTTGGCTTACCATACGAGAGGTCCTGGGATCAAATCCCAACAGGGACATTGTATTTTTCAGAGATAAAGCATACTCTACTGTTATACATATATTCAAGTTTTTTTTATGAAAATAATAATTTTACTGATGTTTATGATTATGCAAATGATGTTGAACAATCTCCTAACCAGTAACCATAGAACCAAGTTAGATTTGAATTGAATTCAATATCATTTTTTATGGACATAAGGAACCAATATTGTCCTTGACCTATGGCCTCATTCAATATTGACATCTTATGTCCATAGCAACTCATTAATATACAAAAAAATGTTATTTTCATGCAAATTACAAATCACAAATTTGACATTCTATATATAGAGTTTATTCAACATATGAAATCATTACTGAAGCAAAATTAATACAATGTACAAAATGCACACCAAAATAAATATCATGATTACAATATTGTTATGTCACACACACATTTGCTTTGAATGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09763	Sec3_CC	Exocyst complex component Sec3, coiled-coil	Repeat	Interproscan
PF15277	Sec3-PIP2_bind	Exocyst complex component SEC3 N-terminal PIP2 binding PH	Domain	Interproscan
PF20654	Sec3_C-term	Exocyst complex component Sec3, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019160	Domain	Exocyst complex component Sec3, coiled-coil	Interproscan
IPR028258	Domain	Exocyst complex component Sec3, PIP2-binding N-terminal domain	Interproscan
IPR048628	Domain	Exocyst complex component Sec3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16092	SEC3/SYNTAXIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000145	Cellular Component	exocyst	Interproscan
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006887	Biological Process	exocytosis	Interproscan
GO:0006893	Biological Process	Golgi to plasma membrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19983	EXOC1, SEC3; exocyst complex component 1	-	Membrane trafficking	ko04131	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_43088-1.37 global RNA-seq network