Gene detail

Detailed information of Bpl_scaf_42709-4.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_42709-4.13	WD40 REPEAT PROTEIN	Bpl_scaf_42709	495782	526793	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_42709-4.13

Transcript

Bpl_scaf_42709-4.13

ATGGAACGTGCGCCCGTCTCTCTTTCAATTTTAAGGAAGGATGACAACAGTAAAGCTGTTCCAACTCTTACTACTTGTTCGGTGCCTAGTAAGTCTAGCTGGAGGGGTCACGGAGGGAGACACCCGACCCCTAGCAGTGTGGAGTTTGATAGACAACTGGATAAAATTTCTCTTTGGATAGAAGATTGGAATCATGATCAGAGATGTCGCTTGATAGAAGCTCTATTAAGAAGAAGTAACCATCAACAGTTTCAGTTTTTATACACTGTAATGCAGCCACATCAACACAGAGATTTTATGTACACAGCACAGAAACAGTTCCCCGAAACAGAATTTACACCAGTCAGTACACATACCACACGAGAAATCAAGAGACGAGTACATCTTCACAGAGAAGACAACTATTACAGAGTTAAGAGTGCCTATCTACACCTTGATGATGAAGTTAAGGAACAGAACAAAGTTAAAAACTCAATCAAGTTCCCAGATATCTTACAGGAAAACCATCTTATTATACAAAAAAATCTGACCGATCTGAGTTTTGGAACCAAATCTATGGCAAGTCTACCTAAGCTGTGTACAGCTCCAAAGAAAAGGTCATTAAAAAGCATACGGAAATATAAACTATTACAGATAAGTAGAGAAGACCTCTATAATGGAGACACTATAAACAGATTTATTGACATGCCTGTGAGAAGACATATTCAGGATGAGAGACTGACAAATAGTGTTCCTCTGTTTAGTAGCAGAATAGATAAAAGTGCAATGTCTTCTATAAAGCCAGTCTCTACAGCTAAAACAATAGAGAACAAACCAGAGGCTGACCAGATCTATGACCTCAGTACAAATGCAAGTACAGTAGTTCATTGGTATACAGATCTATGGACAGATTTAAAGAGAAATGAATTTCTACACAAACTAATTTTAAAATTAGACCTGAGACAACACTACTTCATTTCAAGTTTTATGTTGGTGAGACAACATAGAGATTTTTTAAGTCTACTACCAGAAAAAGTAGTTTTGCGAATACTACATTTCTTAGACCCAATAGAACTGTGTAAATGTTCAGAGGTCAGTAAATCGTGGCACAATTTAGCACACCACAATACACTGTGGAAATGGAAATGTGATACTGTAAACATAAAAGTGTGTATACCCTCTAACCCTGTGTGGAAACATGTGTACCGAGATAATGTCATACTAGAACGCAACTGGAACAGTGGAAATTATCGTACGATTGATCTTAAAGGCCATACTGCACCAATAGAAGCAGTGATTTTTGACAGACACATTCTTGTCAGTGGAAGTCAAGATAAAACTGTCAAAATATGGGACATAAAATCAGGAAAATATACACACACATTCGAGGGTCACCAAGGTGGAGTGTGGTGTTTAAGTTTCTTTACACCAAACCTGATATTGAGTGGTTCACATGATGGATCTATTAAGGTTTGGAATGTAAAGGAAAGGAAAATGGCAAGATCTATACAAGCTCATGAAGGTCCAGTCTGGGCCATGTCACTATATGGAAAAACTCTAGTCACAGTTTCACAAGATAAAACTGCCAAGATTTGGGACATTTCTCGCTGTCTCCTTTTGATGACTTTGACAGGACATAATAAACCAATATTTGCTGTAGACATGAGTGAAGATGGAACGTTGGTCATCACAGGTTCAGCTGATAGAACTGTCAAAATCTGGGAATTAGAGACTGGAAAATTACGAAAGACAATTTGGGTGAGCAGTTCAACATCTGTAATGGCCGTTAGTTATAGTAAAGGATTCATTGCTGCTGGATATGACAACGTCGTCTGCTTACACAGAGAAACAGGAAAACTTGTAAAAAGCTTCCATGAACATGAGAAAAGAGTAGAGTCTGTTCAGTTGAAGATTGAAGATCCTGAAAAAATAACAGGGAGCATTATCAGCGCTGGACAAGGAGGATTTGTCAAGTACTGGGATACTAAGCAATCTCAAAGTTTACAGACATTCAAGATAAGTAAAGATGGCGGTACTGTCAAGTCAATACGATATGATGAATTAAGGATCGTAGGAGGACTAAAAGACAGAATTAGAATTCTAGATTTTCAAGCACAAAACCAGTAATGTTTGAATGTTGAAATACATATTTTAAACTATGCCAAAGCATGCTTTAGTGCTCAAACATTTGAGATTTTGTTTACAATGAATACAAAAACTCTCTCATTTGAAAGCATTATTTATTCATAAAACCTTTTCTTCGTAGATGTATAAGGAAAAAATCTCAGGATAAATATATAAATGTCTTAAGTATAAAGTTGGTGAAAATCTTTACAACGATTTTACATACAATAATTGATACCTTTTAATAGACCATATCCATCTTGAAAGATCTCTCTTATGGAAAATCACCTTCTATTAAAGAGACCTTTCCATTCTCTTTATAAATCAAACCTCTTTTTAGAGACCATCTGTCTTGAATGTTCTCTCTTATAGGAGACCACCCTCCATTATGAGACCTATTCATTCTCTTTATAAATCAAACCTCTTTTAAGTGACCACCCGTTTTTAAAGATCTCTCTTATGGGAGACCCTCTGTCTTGTTAGACCACTTTACAATGTGACAACTCTTCGTTATTTATATTACACAAACCTCTCTTAAGGTGGTACCATACACTTCAGGTAAAATTTGATCTGCTCGTTTAATTTTCTTATTATTTTGGCAGTGTATTTGAATATATCCACTGTAATAAATATCAAAATTTTAACAAATTCCAACCAACAGACTCAGAGCTATAAATTCACTAGCCACATAGCAGCTTTTCTCTCTGTGGTTTTGATCACTTGAAATCTGCATACAAACATCATATAATCAAAACGTTCAACTGATTTTAAAGAGTTACCTCCCTGTAGTGTCAGGTACCACCTTAAGAGACCACTTGTCTTGAAATACCTTTTAACTGATAGAAGGGTTCATCTTTCATAACAGGTTACATTGTATATTTTTGCTATATATATACAAATGTATATATTTATTGAGATTATAGGTTATATTTATTAACAATTTATTTATTTCCTAATGTGCCAAATAGGAAACGGAGGATACTAATATTGCACAAGTTTAGTTTTGTGTGTATATTAATTGGAAAAGAACATTTCTCTTATACAGTAAAACCTATCTAAACTGAACCCCGTTGGGACTGAAAAATTTTTTCAGTTTAGACAGGTGTTTGGTTTACACAGGTTCAAATTACATAGACATTTAGTAGATGGGACTGTAAAGTCTGTCTGGTTTTATAAGGCAGGTTTTCGGTTTACTCAGGGTTCGGTTTAGACAGGTTTCACCGAGTTATATTTGTCCAATCTTGCCACAGTCTTACATCATCAGTAGTGTATATTTTATTCTTAGAACTAATTTATTGTAACAAAATATTTATTTTCCAATGAATAAAATAATTGTAAAATGCCAGATTTTTCTTGTTAATTCATTTACCAAATTTTACATCGACTGAGAATGTGCTTGTCTCAGAATTATCAGTAATATTTATTAAAGGAAAGTGTTCATTCTACTTCTACCAAATATCGACCACCTTCTCACAAGTTGAAGATTATGTATTTTTGTAGATTAAACAAAATTGTACCAAACTTAAGAGTTTCAAGATGGAATGACATAAAATATGAGAAAATCAGTCAAAT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_42709-4.13 global RNA-seq network