Gene detail

Detailed information of Bpl_scaf_42709-0.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_42709-0.11	TRANS-SULFURATION ENZYME FAMILY MEMBER	Bpl_scaf_42709	6597	36683	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_42709-0.11

GCGAACTGGACGAGAATTCCTTTACTTATTATAAAATCCCGAGATACATCGAATGGTAAAATCGGCCATTTTCTAGCATGTTATTTGCCGATTCCACCCCCTTTCCATTTGACATCCCCTGGTTGGATTGGATCCTATTCAATTTCAATTTCAAATATTTTATTGAATCAATTGCACATATATAGTACAGAAGTTCAAAGGGATTACACATCAGGCACAGCCTATGTAAGTGTTCTCCCACAATATTCAACTGAAAACCAAGGGAAATAGATAGTGAAACGCCTTGTTTTACCAGATAATATACAGATTTAAGTGAGGATGGAGAACTACAAACCCTTTCCACATTTTGGTACAGATGCCATCCACGCAGGACAGGATCCAGAGCAATGGATGTCGAAAGCTGTAGTTCCTTTGATTTCAATGTCTACAACTTTCAAACAATCGGGACCCGGTGAACATGCAGGATTTGAATATTCTCGAAGCGGCAATCCTACCAGAAAATGCCTTGAAGAATGTATTGCTAAATTAGAGGGAGCAAAACATGCAATGGTATTCGCATCAGGATTAGCCTGTACATCAACCATCACTCACATGTTACAGAATGGAGACCATATTGTTAGTATGAATGATGTTTATGGAGGTACAAATCGTTATTTTAAGCAGTGTGCCTCTAGAATGGGAATAGAAACATCATTTGTTGATTGTACTGATGCAGAAAAGGTCAAAAAGTCTATAAAACCCAATACCAAGATGGTTTGGGTAGAGACACCAACTAATCCCACAATGCAGTTGGTTGATATAGAAGCAGTTGTCAATGTAGTTCGTGGTGAAAAGAAGGATATATTTGTTGTTGTAGACAATACCTTTATGTCATCTTGTATGCAGAGACCTTTAGATTTTGGAGCTGATATAGTGATGCATTCTTTAACTAAATATATGAATGGTCATTCTGATGCTGTGATGGGGGCATGTGCAACAAACAGTGATGAGAAAGCAAGCAGATTAATTTTTTTACAAAATGCACTTGGACCAGTACCTTCTCCTTTTGATTGTTATCTAGTCAATAGAGGATTAAAGACTTTACATTTGAGAATGAAAGAACACATGAAGAATGGTTTAGCAGTAGCAAGATACCTTGAGAAACACCCATTTGTTGATAAAGTTGTACATCCAGGTTTAGAGTCACATCCTCAGTATGAATTAGGAAAGAGACAGATGAGAGGGTACAGTGGAATGGTTAGCTTCTGTATAAAAGGGGGATTAGCTAATGCTAAAGTATTTTTACAAAGCCTTAAGGTATTCACATTAGCTGAGAGTTTAGGTGGATTTGAAAGTTTAGCTGAACTTCCGTCTATAATGACACATGCCTCTGTACCCGAGTCTGAGAGAGATGAATTAGGAATATCTGACACCTTAATAAGATTATCTGTTGGAGTGGAAGATGAAGAGGATATTATAGCTGATCTAAAGCAAAGTCTAGAGGCAGCTCAAAAGGTATAATGGGAGATAACTGTGTATTGTAGGATTGTCATTCCTTTTGATGATTTATACTGGTAGTATCTACTAGTTCTCAATTTACTATTTTAAAGTTTATTTATAACTTTTCAAATTTCTGTATTGCTCATAGTAGATTTTGTCTGTAGTTTTTACTTTTTAAAGCCACATCGTATCCGTCATGATTCTTTAATAAAACTAGAGAAAAATAACACATGGTGCCCTGCCATGAACTTTGTTATATCAAGGGGTCATTGATTTAGTCCTCGTTCCGTGATATTCGATGCCTGCTCTTTGGTATTTAAATTTGGTTTTTCAACATTTTGGGATGGCGTACAACTGAATTAGTTTAATACAGAATTGTACATGTGGTGTACTACATATATAACTAAGTTATTGTTGGTGATTCTTACCATTCTAATGAACAATTAGATTATTTCAAATAATATTTTAATATGTGATATACCGGTTATCAAATGTCCTCATTACTTGTGCATATTTCTTTATATTTGAAGTTGTGATAAAATGTTTGTCTCAATTTTAGTGATTACAATTTTTGTTAATTGTTAAGAATTAATTATTTGTATTAATTTCAATTCATATGCATAATATTATGGCAAAATATTGAGAAAAAAATCATCATTTTACATAAATATGTTATGATCTGCTTAAAAAATATAACAGAAATTGGTATGAAAATAATTATTGAATAATGCTAATTTGTCATCACATAAAATGTATTCGTTTTGAGTTTTGTCAGTTATAATGATGCTAAGCCAATCCAATGTAATACTATTGGTTATTAAGACCAACAAGATACATTATATTTTACACTGTTTTCTTGTTAAAGCCATTCTATTTGATTAACTAGGGAGTGGGGAATTGCCATTTTTCAAAGACATATTTCAGAATTAAAATATCTATCAATTATTTATAAGGAATACATTTTTGAAAGATCTGAAAGGACCATTTTGTATTAATTAGATGTCATAATTTACATTTTTTAATATATTTTATGTGTATACAAACTAAGCAGCAGTCTGTGACTCAGTGTAGATGACTTTTTCTCTCCTTGATCATGAATAGGAGTACACAACAATAGACTCTTCTTAGTACTAGAAACATATATAACTCTAATTCCCTTTGCATAATAAATTTTAATTACAAAACACTTGTCTGAACATTATGGTGAAAATACTGTTTAATATTTATCATTGTGGTATCAGAAAAAAAACAGATTAACCCATACACCACAGAAAAAAACATCTTCAATAAAGATTGCCTTGTTTTGATCAGAAAACAACGGTGGTTATTAATATTCAGTTTTAGATACTTATTTGTCAGCAAAAAAGACCATTGACATAATTAGCTCATTTCTTTGTATTGTTTAAGTATGTAATTACATTCAAGATTATATTTATATTGGGGAATAAATTATACAAGTTTTGTAGTCTGTGTTATTCTTCTTGACATATCCAAATTTAAATGAAACGTTGACCAAGTGTCAGTTCAGGGGTATGGGTAGGGTTATGGCATTTAATGCCACTTTCAACAATATTTCAGCTATGAAATACATTTGTTACAACAAATCTATTAGAACAAATCTTTTAGAACAGACACTAATAAAAGGGGATTAATGTTATAAAAATACAAGAACTGCTGTGTTGTGTTCTGAAAATTTGGAATTCACTGTATGTTCCCCATCAAGATCTGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01053	Cys_Met_Meta_PP	Cys/Met metabolism PLP-dependent enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000277	Family	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11808	TRANS-SULFURATION ENZYME FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016846	Molecular Function	carbon-sulfur lyase activity	Interproscan
GO:0019346	Biological Process	transsulfuration	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01758	CTH; cystathionine gamma-lyase	EC:4.4.1.1	Biosynthesis of amino acids	ko01230	PMID: 28812709
			Glycine, serine and threonine metabolism	ko00260	PMID: 28812709
			Cysteine and methionine metabolism	ko00270	PMID: 28812709
			Selenocompound metabolism	ko00450	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_42709-0.11 global RNA-seq network