Gene detail

Detailed information of Bpl_scaf_42542-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_42542-2.7	RNA BINDING PROTEIN PUMILIO-RELATED	Bpl_scaf_42542	198293	244209	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_42542-2.7

ATGAACGAAGTATCGTGGGATAACCAGACTTCAAGAATGATGAACGGTCCAGAGATGGCGGGGATTCGTCAACAAAATTTCTCCAATCGCTCTCAAGACGATGCAACCGTTGGCTACTTTTTCCAGCGCCCGCAGACAGACGCTGAAATGAACAACTACCCAGGGAAGCGATGGGCTATTGGTGACGATAGTGTCATTGAACAGGCTAGAAATGTTCAGGATTTAGAGAGGGATTTTCAGAGTCTTGCTGTTGGAGGAAGAGATATGCCTAGTTCTACCAAAAAATTATGGGGAGATATGGGAGATGGACCAAAGCCAGGGGAGCAAGCTAAGCAAATGTTTCCACCAGGTAACCCATGGATGGCCCCCAGAGATGATTCATGGGGAAACCATGGCAATATGGAGCCTGGTGGACTGGGTGTTGATATGGTGGAGTACGTCTTAGGTGGGGGATCACCAACTGGGAAAGAATTAGATGCTAGATTGAGGATGAAGATGGGACCACCAAATCAGTTCCAGAGAAAGTTTAAGGTCCCAACGGCCTACTATTCCCAGGTCCAGCAACAAGATGGCAGCATGGTTGATGGTGGAAATGATAAGAAGAGCAAGACTCCGTCACCATTTGAGGGTCGTGATGGCGACCGAAATGATGAGAACAAGGAGAACATGCAGAGCAATGGTTTAATACAGAATGGACTGGACGAAGAAAACGTTTTCAGAAGGGGTGGCAGTCGTCAAAATTCACCGATGGGAGATGAAAACAAGATGAATCAGATGGGAGGGCCTAACAAGGGAGACAATGATTTCTTTGACAACCAGAACCAGTTCCATCAGCCTGGTTTCCAGTTGGATCCACCACCGTTTGAGCCCATGGGTCTGGACCCTGGACACTTCGACTACAACAATCAAATGATGCCATCTATGGATAGTCCTAATTTTAATATGGACTATGCACAGTTGTTACAAAGACAACAACAGCCCATTGCAGTTTTAACGCAACAACAGTATGCACTGGCTACACAACAGCAGCAACTAGGCTTGGGCCCTACTGCCATTACACCAACTTCCTACGTCCTGAGCGCACAGGATCCTTACGCCGTGGGCATCCCACTTGCAGGACCTACTGTTTTACACCCCCAGTATTATGGAGTACAGGCACCCTGGGGGATTTACCCCACCAATTTAATACAACAGCAGGGACAGCAAACACCCCAGGGCCTGTCCTCTCAACAACAGCAACAGCAGATCATCAGAAGCCAGTCTGGTCGACCTTTGACCCCATCACAGCAGAATGACAATGTGTCGTCCCAGCCTCTTACTCCCCAAGTTCCTATATCACAGTACCAGATCCTTGCTCCAGCTTATTATGACCAGAATGGACAGTTAGTAATGGGTAATCCTAGAGGTCTGGGCACTCCTGTTCGACTGGTACCTCCAGCTCCTGTTCTAGTCAGTGCCTCCGGCAACCAGCAAGGTATGTTTATTCAACAGAAACTTGAAAGAGCTACATCCCAAGAAAAAGCAATGGTCTTTAGTGAGATCCTTGCTGCTGCATACAGTTTAATGACGGACGTGTTTGGTAATTATGTAATACAGAAGTTTTTTGAGTTTGGTGACAATGAACAGAGGCAGACATTGGCTCAAAGATTACGAGGTCACGTTTTACCTCTGGCTTTGCAGATGTATGGTTGCCGAGTGATACAGAAAGCGCTGGAGACCATACCCAAAGACTTGCAAGTGGAAATCGTGAAGGAGCTTGATGGACACGTTCTAAAATGTGTTAAAGATCAGAATGGTAACCATGTTGTACAGAAATGTATAGAGTGTGTGAAGCCAGTACACTTACAGTTCATCATTGATGCTTTTAAAGGGCAGGTGCTAGCATTATCAACGCATCCCTATGGATGTCGAGTGATACAAAGAATATTAGAACACTGCATATCTGAACAGACCAAACCAATTCTTGATGAGTTGCATCAGCACACGGATAGACTTGTACAGGACCAATATGGAAACTATGTCATTCAGCACGTGCTGGAACACGGTGCTCCCGAGGATAAGAGTATAATAGTTAGTGAGTTGCGGGGAAAGGTTGTTCCTCTTAGCCAACATAAATTTGCCAGCAATGTTGTAGAGAAATGTGTATCACATTCATCACGAGGAGAGAAAGCCATGTTGATAGAGGAAGTGTGTTCTATGAACGACGGTCCACACAGTGCCTTGTATGCAATGATGAAAGACCAGTTTGCTAACTATGTTGTACAGAAGATGATAGACGTGGCCGAGCCACAACAGAGAAAGATACTCATGCACAAGATCAGACCACATATTTCTACACTGAGAAAATACACCTATGGCAAGCATATCTTGGCTAAATTGGAGAAATTTTTTATGAAGAACAACTCTGATCTTGGACCCATTGGCATGCCACCAAATGGTACCCTCCCATGA

Transcript

Bpl_scaf_42542-2.7

AAACAATGTCGATCGCCATGATATAAAGAAGAAGTTACAGGGTCATGGGAATCTGAAGTCATCACGGAGGAATAGAAGATAGAATGCTCGTAAAATACTAAAGTTAATAATGAACGAAGTATCGTGGGATAACCAGACTTCAAGAATGATGAACGGTCCAGAGATGGCGGGGATTCGTCAACAAAATTTCTCCAATCGCTCTCAAGACGATGCAACCGTTGGCTACTTTTTCCAGCGCCCGCAGACAGACGCTGAAATGAACAACTACCCAGGGAAGCGATGGGCTATTGGTGACGATAGTGTCATTGAACAGGCTAGAAATGTTCAGGATTTAGAGAGGGATTTTCAGAGTCTTGCTGTTGGAGGAAGAGATATGCCTAGTTCTACCAAAAAATTATGGGGAGATATGGGAGATGGACCAAAGCCAGGGGAGCAAGCTAAGCAAATGTTTCCACCAGGTAACCCATGGATGGCCCCCAGAGATGATTCATGGGGAAACCATGGCAATATGGAGCCTGGTGGACTGGGTGTTGATATGGTGGAGTACGTCTTAGGTGGGGGATCACCAACTGGGAAAGAATTAGATGCTAGATTGAGGATGAAGATGGGACCACCAAATCAGTTCCAGAGAAAGTTTAAGGTCCCAACGGCCTACTATTCCCAGGTCCAGCAACAAGATGGCAGCATGGTTGATGGTGGAAATGATAAGAAGAGCAAGACTCCGTCACCATTTGAGGGTCGTGATGGCGACCGAAATGATGAGAACAAGGAGAACATGCAGAGCAATGGTTTAATACAGAATGGACTGGACGAAGAAAACGTTTTCAGAAGGGGTGGCAGTCGTCAAAATTCACCGATGGGAGATGAAAACAAGATGAATCAGATGGGAGGGCCTAACAAGGGAGACAATGATTTCTTTGACAACCAGAACCAGTTCCATCAGCCTGGTTTCCAGTTGGATCCACCACCGTTTGAGCCCATGGGTCTGGACCCTGGACACTTCGACTACAACAATCAAATGATGCCATCTATGGATAGTCCTAATTTTAATATGGACTATGCACAGTTGTTACAAAGACAACAACAGCCCATTGCAGTTTTAACGCAACAACAGTATGCACTGGCTACACAACAGCAGCAACTAGGCTTGGGCCCTACTGCCATTACACCAACTTCCTACGTCCTGAGCGCACAGGATCCTTACGCCGTGGGCATCCCACTTGCAGGACCTACTGTTTTACACCCCCAGTATTATGGAGTACAGGCACCCTGGGGGATTTACCCCACCAATTTAATACAACAGCAGGGACAGCAAACACCCCAGGGCCTGTCCTCTCAACAACAGCAACAGCAGATCATCAGAAGCCAGTCTGGTCGACCTTTGACCCCATCACAGCAGAATGACAATGTGTCGTCCCAGCCTCTTACTCCCCAAGTTCCTATATCACAGTACCAGATCCTTGCTCCAGCTTATTATGACCAGAATGGACAGTTAGTAATGGGTAATCCTAGAGGTCTGGGCACTCCTGTTCGACTGGTACCTCCAGCTCCTGTTCTAGTCAGTGCCTCCGGCAACCAGCAAGGTATGTTTATTCAACAGAAACTTGAAAGAGCTACATCCCAAGAAAAAGCAATGGTCTTTAGTGAGATCCTTGCTGCTGCATACAGTTTAATGACGGACGTGTTTGGTAATTATGTAATACAGAAGTTTTTTGAGTTTGGTGACAATGAACAGAGGCAGACATTGGCTCAAAGATTACGAGGTCACGTTTTACCTCTGGCTTTGCAGATGTATGGTTGCCGAGTGATACAGAAAGCGCTGGAGACCATACCCAAAGACTTGCAAGTGGAAATCGTGAAGGAGCTTGATGGACACGTTCTAAAATGTGTTAAAGATCAGAATGGTAACCATGTTGTACAGAAATGTATAGAGTGTGTGAAGCCAGTACACTTACAGTTCATCATTGATGCTTTTAAAGGGCAGGTGCTAGCATTATCAACGCATCCCTATGGATGTCGAGTGATACAAAGAATATTAGAACACTGCATATCTGAACAGACCAAACCAATTCTTGATGAGTTGCATCAGCACACGGATAGACTTGTACAGGACCAATATGGAAACTATGTCATTCAGCACGTGCTGGAACACGGTGCTCCCGAGGATAAGAGTATAATAGTTAGTGAGTTGCGGGGAAAGGTTGTTCCTCTTAGCCAACATAAATTTGCCAGCAATGTTGTAGAGAAATGTGTATCACATTCATCACGAGGAGAGAAAGCCATGTTGATAGAGGAAGTGTGTTCTATGAACGACGGTCCACACAGTGCCTTGTATGCAATGATGAAAGACCAGTTTGCTAACTATGTTGTACAGAAGATGATAGACGTGGCCGAGCCACAACAGAGAAAGATACTCATGCACAAGATCAGACCACATATTTCTACACTGAGAAAATACACCTATGGCAAGCATATCTTGGCTAAATTGGAGAAATTTTTTATGAAGAACAACTCTGATCTTGGACCCATTGGCATGCCACCAAATGGTACCCTCCCATGACTATCTGTAGCTCCTGATACTGGTCAATGGGATTGGACAGTAGATTGAAATCTTTTTTGATCTTCTTTAAAGTTATGCTTTAAGGAACTATTGATATTGAGAGAGCATTTTTTTTATGATTGTGGAAAATCAAGATGCCTCTTTTTTTTTTTTTTTAGTTTCTTTGTTTTATTATCAACTTTTTTTGTCTTCTTTTTGTCTTCTTTTTTTTTTTGTTGATTTCTTTTAAATTTTGTTGTTGCTTTTTTGTTGACGATATTTTTTCCTTTATTTGCATTTAAGTTTTCAAGTTTTGTTTATAACGTCTATAAAAACGATTATGGTTTTTTAGCATTTATGTTTGTGTAGAAATGATTTTTATTTTTCGGAAGAATGGCAACAAAATTCTTCTAGATTTGCATGTTTATTTGATGATTCTGTCTTCAGTGTACTACTAGTTACTATATAATGGAGAAGAAGGTGTATTTTATAGTGAAACTGGTCCTCGTATATATGTTACTTATCATAAAGTAAGTCCGACCAAACAAATTTAGTAACTTGGTTTTCTGACTGCCTTTTCTGTGGGAAAAAAGATTAGGGTGAACAGCATTTCTTTTTTCATTTTATTGAGGAAGGAAAAATTATGTGAGGGGTGAATGGTCTTTTTTTTCTCGTGGTTTGAAACATCATTAATTGTTTACGATTCTAATATAACTAATTATTATCGACAGCACCATTTTTATGTTCCAATGAGTACAAGTTATTTCTCTTTTAACGAGATCTGCTTTATTATGAATTTGAATGCAGCAATATTTTCAGAAGTAAGGAAATATAGCATCAACATTTTTTGTATATACATGTATTGACTTGCCAATAAAATTGGTAATGCAGTCTAAAATAAACATGCATGTTGACCTGAGAACCAAGTAATTAAGTTTTCTTGGCCTAAGTAGAGTGTTAAGTCTTTAAATGACAACCTAAAATCTGACAATCAGCAAATAAACATGTTGGCTTCTGTTGTTATAACTTCAATCAATGAATGAAATTGTGTTGACAGTTCTAAAGTTTGATAATGGTAATAGTAGTTTGGCAATAACAAGGAAAAGACAACCTTTTGGTTTGCCAATAACAAAGGAAAGACAACTCTTAAAAGAAAGTTCTAATCGTAAAACATATAGTAGTTTGCCAATAACAAAGGAAAGACAACTCATACTAAAGAAAGTTCTAATTGTAAAACATATCATGTATTGATAAAATCAAGGAGTAAAATATTAATTATATAATTATTATGTTTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00806	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001313	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033133	Domain	Pumilio homology domain	Interproscan
IPR033712	Domain	Pumilio, RNA binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12537	RNA BINDING PROTEIN PUMILIO-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010608	Biological Process	post-transcriptional regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17943	PUM; pumilio RNA-binding family	-	Spinocerebellar ataxia	ko05017	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_42542-2.7 global RNA-seq network