Gene detail

Detailed information of Bpl_scaf_42120-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_42120-0.3	CRUMBS FAMILY MEMBER	Bpl_scaf_42120	50270	85797	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_42120-0.3

ATGAAACTTCACGCTGTTGGTGCAACAGACGACTCCAGCAAATTAATGACCAGGAATACGTCGTGTTACTGTAACATCTGTATTGGAGGTGCTTACTGCTACAGCTGGAGAACACAAAATTTCATATGGAGTGGCATAGGTTTGCTCATACATGACCATCAAATGGAACAGGAGGAAACCGAAGCTACAGAAACCGAAAGAATCGGAAATACTGACCCGGAACAGAAGATTAAAGTGGGAGATTTCGTTGCGGTTGTCTATGACGCTAAATGGTTCCTAGGAAAGATTGAGGAAATCGACAAAGAAGAAAACGATTGTGAGGTCAATTTCCTTACAAATGCTAAGCACATGTTTAGATGGCCAACGACACCCGATCTATTATGGGTTGATCAAACTCATATTTTGTGCAAAGTAAAATCTTTAGTACCTTCAGGAAAATCTGCACGGCTTTACAAAATTGGTATCCATGGATACGCAATATTAGACATACATCTGAGCGAAATCGATACCGACAATAAACTGGCAAATGGTCAATGCTGTCAAGGTGGTCATGAATCAAATGGTCAATGTAGTACCCCATGTCATATGATTATGAAATTATGTTATGGAAAGTATCGTAATCCTTGTCAATATGGTTCAACGACATTTACACTGCCTAGTAGTAAATCTAGAAAGAATGTTTTTGGAAGTTATATAGGAAACACATCTAACCCTGTGTCGTTACACTTGTCGAGGTGGCAAATTTCACTATTGTCGTCTGGCTTCCACCAAACATATGAAACATCTAACTGGCATGAGAAAATAGTTCACGGATCACCATCATCACATTTCAGTCTGAAGCTACAGTACAAGGTTTATTGTCCAAGTAATGCATACGGCAAAGGATGTGCATCTATCTGTAAACATGGACTACCAGAAAACAAATGTGACGTGAGAAGATGCATACCAGGATGGAGAGGTTCACATTGTGTGAACGATATAAATGAATGCACATCTAACCTCTTAAAAGACATCTGTAACACTGGAACATGTACAAATACACCGGGCAGTTACCACTGTAGTTGTCCATTAGGAACCTATGGGAAACGATGTGATATATTGGACACATGTGATTCACACCCCTGTCAAAATGGAGGTACTTGTCAAAGTCAAAATAAAACAATCTCTTGTAAATGTCAACATGGATTCACAGGACAAAAATGTGAAACACGATCAAACCAAAAAACAACATCAATAAAAACGAATACAACAACAACAATAACAACGACAACATCAATAGCAACAACACATGTCAAATCATGTCTTAATGATTGTAGTCATCATGGGTCATGTCATAATGGACGCTGTACCTGTGATCCTAAATGGGAAGGAGATGACTGCTCCCAACGTAATTATTGCTTAAGCGATCCATGCAAATACCACGCAAAGTGTATAAATAGCAAGACGACATATATTTGCAAGTGTAGTACGCAATGGACTGGAAAAAACTGTGAACTTCATAATTATTGTGCAAGTGCACCATGTCATCATAATAGTACATGTACAAATACTCAGAATACCTTCTCATGTGCCTGTTCACGTGGATGGGTAGGTAAAACCTGTAGCACTAAGGACGTCTGTGTCAGTAAACCTTGTCTTAATGGAGGTCAGTGTCACAATGATGTATCATCGTATAGATGTAGCTGTGCACCTGGATGGTTAGGTCAAACATGTAGTAATAAGGACTTCTGTGTCAGTAAACCTTGTCTTAATGGCGGTCAGTGTCACAATGATGTATCTTCGTATAAATGTAGTTGTGCCCATGGATGGTTAGGTCAAACATGTACTACTATGGACTTCTGTGTCAGTAAACCTTGTCTTAATGGAGGTCAGTGTCACAATGATGTGTCATCGTATAGATGTAGTTGTGCCCATGGATGGTTAGGTCAAACCTGTAGTTCTAAGGACTTCTGTATCAGTAAACCTTGTCATAATGGAGGTCACTGTCACAATAATGTATCATCGTATAGATGTAGTTGTGCCCATGGATGGTTAGGTCAAACATGTACTACTAAGGACTTCTGTATCAGTAAACCTTGTCTTAATGGCGGTCAGTGTCACAATCATGGATCATCGTATAGATGTAGTTGTGCCCATGGATGGTTAGGTCAAACATGTACTACTAAGGACTTCTGTGTCAGTAAACCTTGTCTTAATGGCGGTCAGTGTCACAATGATGTATCTTCGTATAAATGTAGTTGTGCCCATGGATGGTTAGGTCAAACCTGTAGTTCTAAGGACTTCTGTATCAATAAACCTTGTCATAATGGAGGTCACTGTCACAATAATGTATCATCGTATAGATGTAGTTGTGCCCATGGATGGTTAGGTCAAACATGTACTACTAAGGACTTCTGTGTCAGTAAACCTTGTCTTAATGGCGGTCACTGTCACAATAATGTATCATCGTATAGATGTAATTGTTCCCATGGATGGTTAGGTCAAACATGTACTACTAAGGACTTCTGTGTCAGTAAACCTTGTCTTAATGGC

Transcript

Bpl_scaf_42120-0.3

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF07974	EGF_2	EGF-like domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001774	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013111	Domain	EGF-like domain, extracellular	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007154	Biological Process	cell communication	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02599	NOTCH1; Notch 1	-	Notch signaling pathway	ko04330	PMID: 28812709
			Th1 and Th2 cell differentiation	ko04658	PMID: 28812709
			Thyroid hormone signaling pathway	ko04919	PMID: 28812709
			Dorso-ventral axis formation	ko04320	PMID: 28812709
			MicroRNAs in cancer	ko05206	PMID: 28812709
			Breast cancer	ko05224	PMID: 28812709
			Prion diseases	ko05020	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709
			Endocrine resistance	ko01522	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_42120-0.3 global RNA-seq network