Gene detail

Detailed information of Bpl_scaf_41576-6.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41576-6.3	HISTONE DEACETYLASE HDAC1-RELATED	Bpl_scaf_41576	618958	670451	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_41576-6.3

CACATTTGCAGGTTCCCTTAAGTGCCCTTTATAGACAGGTTTGACTGTATATGTGAAATTAGAGAACTTTAACTGTATTGGAACTTTCTGTAGTATTATAGAGTAATTTTGTTAGAATACTTTTGTAGGCCCAGGACATCCTATGAAGCCACATCGTATTGCTCTGACACATTGTCTTGTTCTTCATTATGGCTTGCACGAAAAGATGAAGATATATAGACCCTACAGAGCCTCAGCACATGATATGTGTAGATTTCACTCTGATGAATACATAGACTTCCTACAAAGAGTTACACCACAAAATGTGCAGCAGTTCACAAAACAACTTAGCATGTTTAATGTTGGAGATGACTGTCCTGTATTTGATGGAATGTTTGACTTCTGTTCAATGTACACAGGAGCTTCACTAGAAGGAGCCATCAAACTTAATAATAATCACTGTGATATTGCAGTGAATTGGTCTGGTGGACTTCATCATGCAAAGAAATTTGAGGCCTCTGGATTCTGTTATGTAAATGACATAGTGATTGGTATACTAGAACTTTTGAAATATCATCCTAGAGTATTATATGTAGATATAGATATCCATCATGGAGATGGAGTTCAAGAGGCATTTTATCTTACAGATCGAGTTATGACTGTGTCATTTCATAAATATGGAAACTATTTCTTCCCTGGAACAGGTGATATGTATGAATATGGATCAGAGAGTGGTAGATATTATTCTATTAATGTACCATTAAAGGAAGGAATAGATGATACTACATACATTTCAATATTTCAACAAATCCTAAAGTCAGTGATGGAATTTTATCAGCCTACATGTATTGTTTTACAGTGTGGAGCTGACTCTCTAGGTAGTGATAGACTGGGATGTTTTAATCTGAGTATCAAAGGTCATGGGGAGTGTGTAAAAATTGTAAAGAATTATGGATTGCCTACACTTGTATTAGGAGGGGGTGGTTATACAAAGAGAAATGTGGCCAGATGTTGGACATATGAAACAGGTGTACTGTTGGATGAAGACATAAGTAATGATATACCTTATAATGAATATTTGGAATATTTTTCACCAGATTTCAATTTACATCCTGATGTATCCACAAAACAAGAGAACTTAAACACAAAACAGTATTTAGACAACATTAGAATGACTGTACATGAGATACTGAAGAACTTGATTAGCTCCCCTAGTGTTCAGATGCAGGATGTACCATCAGATCTGCTTAGTATAGAGAATACAGAGGAAATTGACCCAGATATCAGGAATCATCAGGATGAAAATGATAAAAGAGTAGAACCCAACAATGAATTTTATGATGGGGAGAAGGACAATGATAAAGATACAGATGGTTTTGTAGATGTTTAATACCTCACAAGGCAGCTGGCTCTGTCTCCTATATTGTTGATATAAAAAATAGTTGTTTTTTTTCAGTTCATGTCTATCAACAGAATTTGCTATATAAGTTGCAATAATTTGTTAAATCTGATTCATTACAGTCATCAATATTTTAATGACAGATCAATATTAATTGCTATCTGTAATTCTGTACTCTCACTCTTATAAGGAAAACCCCTTCTGCATTTAAAACATGGCCTTATTATATAGGGGCTCACTCTCTTTAGGCAGACAATTTACTTGTATTTTACTATCTAAGTGCATAGGAAATCTGGCCTGATAAGAGTGACCTGGTCTTTGGTGAGAGGGGCCTTATGAATAATAATAATTGTTACACAAGAAGGTTTTACCTGTAGAAGATTTTCTAATACTTTATATTATGGTTGTGGTTGGTTTATGGGTGTTTAATGCTTTCAAAAATATTTCAATTATATCTCGGCTGTCGGTTTTATTGGTGGAGGAAACCGGAGTACCTGGAAAAACCACGACCTGTCGCAAGTCACTGACAAAATTTTATCACATAATGTTGTATCGAGTATACCTCACCATGAGTGGGGTTCAAACTCACAACTTTAGTGGTGATAGGCACTGATTGCACAGGTAGTAATAAATCCAACTACCATACGATCACGACCACGTCTGCCCCGATTTTATTTTGAGTTTTAAGACAATTGGTATCAATTTTGATATAATGTTCTTTAGATTATCTTCTGTGAAATTAATATTGAATTATTAAGTTTATGGCTATGTAAACAATACATGTTACAGAGCATATCTTTAAAACTGGTACACAATATAAAATAAGGATCTCACCCCCTTCTTACTGATATGCCAAACTTGCAAAGATATGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00850	Hist_deacetyl	Histone deacetylase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000286	Family	Histone deacetylase family	Interproscan
IPR003084	Family	Histone deacetylase	Interproscan
IPR023696	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR023801	Domain	Histone deacetylase domain	Interproscan
IPR037138	Homologous_superfamily	Histone deacetylase domain superfamily	Interproscan
IPR050284	Family	Histone deacetylase and polyamine deacetylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10625	HISTONE DEACETYLASE HDAC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004407	Molecular Function	histone deacetylase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016575	Biological Process	obsolete histone deacetylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11404	HDAC3; histone deacetylase 3	EC:3.5.1.98	Thyroid hormone signaling pathway	ko04919	PMID: 28812709
			Viral carcinogenesis	ko05203	PMID: 28812709
			Alcoholism	ko05034	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41576-6.3 global RNA-seq network