Gene detail

Detailed information of Bpl_scaf_41575-0.18 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41575-0.18	E3 UBIQUITIN-PROTEIN LIGASE UBR5	Bpl_scaf_41575	308	47049	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_41575-0.18

TGTTCTTTTCAGTGTCAAGTTGTACTACAAGGGAAGTCAAGGAATTTAATTATCAGAGAGTTACAAAGAACGAACCTTGATGTGAACCTGGCAGTCAACAACTTGCTGAGTCGTGATGACGAGGGTGACGACAACGATGACGATAGTCAGGAATCATACATGCCTGACGACTTGATGTCTTTGTTAGATAGCGGGATGCACTCCGATCACCCCAGCGTTATCATTGATGCAGATGCTATGTATAATGAAGATGTATTTGGGTACTACTCCACATTGAGGAGTCGTGGGTCAGGAACTAGGTCAAGACTAGGTGATAGAGATATGGAAATAGACAGATCTAGAGAAAGAGAATCTATATTTAGAATACGGGAAAGACGCAGATTAGACACAACGTTGAGAGAAGAAGCAATGAAAGCATTGGATCGTGGGAAAAATGATGGTTTAGACGCTGATGGTTTAAAGAAACAGAAACAACCAACTGATAGTCCACTGAACTTTGGGGAAGAGTTACAGTTCTTTATTGAAAAGGACGGGACATCATGCAGATTTTCTCATATTGCTGCCATGCATTCTGAGTTGGTATGTGTCGGAACAAATGGAAACTTATACAGCTGGAAGTGGAACGAACCTGAACCTTACAGACATCCTGACAATCCAAATATACGCCACCCTAAAGTTGTCTCTCTTGGTCTCCAACATGAGAAAATAATAGGACTGTCGGCCTGTAATGTAAGAGCTTCCGTGTTCACTGAGACCCACCGTATGGCTACCTGGGTGGACGATACTCTGAACAAAGTGGCATCCAAACTAGAGCATGCGGTGCAGACATTCCCAGAATTCCTCACAGATAAGATTGTCTCCCTTCATACATGTTCTCTGTACACATGTGCAAGGTTGGAAAGTGGAGCTTTGTACTGGTGGGGTGTAATGCCTTTTGGTCAGAGAAAGAAGATGGTCGAAAGAACGAAAACAAAGAAGAAAAAAAGCAAGGATACCACTTCATTTACATCGTTTGGTACCAGTGACGTTGTGATGGGATCTCTGGTCTGTCTACGGAGTTCTCCTATGTACCATATAGGAGCTCTGGCCTTCACGTCGGTTGATGGTGTACCTAAAGTTGGACAACTCATGGAATCGGCCTGGTCCCTGAATGATACCTGTAGATTTAAAATAATTAAAAACACTGTCAGTGAAATAAAGCCAGAACCGAAGCCAGAAGCCAAACTGCCAGAGAGTAAACCTGACATGCCCCCTCCCCCATCACCTGACTCCTCAACATGTAGTGACCATAGTGGACCATCTCTAGTCAGACCAGCATCATTAAAAAGGAAGAAAGCTCCCACACCAATTAAAGAATTCGAGAAAAAAGATGAGGAAAATTGGCCGCTGAAGAACGTAGTGTTTGTAGAGGATGTAAAAACAGTACCAGTAGGAAAAGTCATCAAGGTTGATGGAGCTTATGCTGCAGTAAAGTTTCAGTCTAAAGATGAGTCTTCCAGTAAAGAAGATTTAACCAGTCTATTACAGGATTGTAGACTTCTGAGGAAAGATGATTTACAAGTAGTTAAAAGTGTGAATGCCCCTCGCTTGCCAGATTGTTTCCAGAAAACACCCAAGAAAGTAACCTTATCAGAGAATGGTCAGATACTAGCAGTGGCTGTTGATTCTGAAGGTATCCATGTAATTGCACGATCAGGATCTAAGCTGAGTTATATTGTGTACAACCTTACAACAGGAAAGCTAGACCAAGATGCACCATTTCCAACTGACACTCAAGCATTCATGGGAAGTCTAAGGAGTGACATTACTCTTCATAACACCGGAGATGAATTGTTGGTACAGCTACAGGATGGTAATGGAGCTATTTACCCCCTAGCCAAGGACTGTAATGACGGAATACGAGATCCTATGTGGTTAAACCTTCCACCAATCAGATGTCTAGGAATGAGGGTCCAAAGTCTGGGTAATACCCTTCTTAACCAGAAAAATAAGGCAGCCGTCATTGTGTTGGCTGTAGAGCACCAGACATTGATTCAACACATATTACGATGTGACCTAGATAAAGTCAAGACAATACTGTCATCGTTAGAACAAGAGCCAAGTACACCAGCTAGTCAGAAACAATTACAGGATATTTTAAGACAACATTGTGATGGGAACAGAAATATCATCCATACATGTATAGCTATGTGTGTTCCTACTTCTAACAAGGATTATGATGCAGATCCACCTAGCTTGCCTACAACAACTACATCTTCCAGTAGTCCGTTTACATCAGCTTTAGAAGCCATTAATGCTGTAAGCAGTGCAGTGGACGCTTTAGCTGCAATACAGTCTAGAAGTTCTCATTCTGAACCAAGAAGTGTTGCCAATAGAAACGAGATGATACGAGACATGATGAGAATCACATCAGCTGCCAGACCACGTAGCAGTACGGGTTCTAGAGGGGGTGCTGTAGATGTTAGTGACTCAGACAGAGAGAGTGATCCAGGAATATGTGTACCCACTCTGTCATGGCCTCCAGACCCTCCTACATATGCTGAATCTTTATATATGGATACTGGATTGCCCCACCCTGCCAGTAACATGGGTCCCCTAGGGCCTACAGAGTACAGTACTGTGTCACTGCCTCCAGTCAAAATGGATGAAAAAGAACGGAGAAATAAAGCCAATCAGATTCTGAAACTGTTATGTGAATCTCCTGTACTACAACCTCATCTTCATACACTGCTGTCTGCAAGGAATGCTGAAGGATTAACTCCCTTTATGCAATCAGTTAGAGGCTGTGCATATCAAGCTGCCCTCCTCCTGTTAGACACATGTAAAAAACTAGGCAGTAAAGATGACCTTGACAAAGCAGCGTTCATGTGCATGATCTACCCTCCAGGATCGACCCTCGACAGTTCCCCCTTACAGATGCTGTGTTGTAACGATACCTGTAGTTTTACGTGGACGGGAAGGGAACATATTAAACAGGATATATTTGAGTGTAAAACGTGCGGGCTGACGGGATCGTTATGTTGCTGTACTGAATGTGCTAGAGTTTGCCACAAAGGACATGATTGCAAAATGAAGAGAACATCTCCTACAGCTTATTGTGATTGCTGGGAAAAATGTAAATGTAAAAGTCTGATAGCTGGTCAACAGGGACCCAGATTTGATCTGTTGAGCAGAGTACTGACAGATACTGATCTGGTTACTCTACCAAACAGCAGGGGAGAGAATATATTGCTGTTCCTGGTGCAGACTGTTGGACGACAACTGGTTGAACAGAGACAGTATAGACCTGCTAGAACTAGAGCTCCTGGGACTAGAAATAAAACACTAGCTCAGGAACTAGATATAGAGATGCCAGAACATGACCTTGAACCTCCCAAGTTTAGCAGACGGGCATTAGAGAGGATTCTAAATGATTGGACAGCAGTCAAGGCCATGATACACAGTGGCAAGAAACAAAATACCAGTTCTCCTGACGTGGTGTATGAAGACCAGCTATACTTAGACAGTCAGAGTGGTACAGCACACCTTGACAAGTTTACACACAATTTACTTGTTAAATGTAGTGTGGAGATGCTTGAAACATTATTGACGACGTTGATTAGAGAGATGCAGAATGATAACGTGGAAGGACGTAAAGCTGAAGCTAAAACTGTCGCTCGTAGATTTGTTAGATCTGTAGCCAGAATATTTGTTGTCATCAGTATAGAGATGTCACCCGATGCTAATAGGAAGAAAAGTTCAACATCTAAATCGTGTGAAGCTTTAGTAAGATGTAAGAAAGCATTCCAGGCTCTGATCAATATAGCTATTGAAGAACTGTGTGAGATTGGCAACTCTCTCATAGCACCTGTCAGAATGGGCGTCACAAGACCTACAGCTCCATTCTCATTGGTCAGTGGAAATATTGAGGCTGTACAGGGAAGTGAAGAGATTTTTAATGTTGACCCGCTTCCAGCGAAATCTAGTTCAACAGATACTGGTACCAGTTCATCCTACATTTCCCACACAGGTGTGTTACCATCACATCGTCAGAGCAACAGGGATCCAGTAGAGAGAGATGATGATGAAATAATGCCTGCAGATGTTGAAGAGGTGGAGGTTGTCGATGGCTTGGAACGAGATGATGACCATTCAGACAGAGATGATCATGATGACCACCAATCAGAACACTCGGATCAAGATCAAGGTCAAGGTGACCATGAGGAGGGAGCCGCTGAAAGTGACATGGACTTAGACTTGTTGGCCGAGTCAGAGAGTGACAGTGAAAGTAGTCATAGCAACCAAGATAATGTCAGTGTTCAAAGAAGTGCCGTTACCGCAGCAACAGCAGGGTCAGATGCAGGAACAGGTCCACTTAGCCTCGCCCACTTCTCTGAAGATTCAGGGGATTCCCCCGACTCATCCAATCAGGAAGATGATTACGAGAGTGATGAGAACCAGAGTGAGGCTAATGATGCAGACGACATGAATTTTATTGATGAACAGTTAGAAAGGTGCAATACTTCAGGTACACATGGACAGAGAACGTTACAGGCACCACAAACGATGCAGTGGGCTATCAGACAGAGAGACACCACATCATCTAGACCTCAGCCTTCAGCTGCTTCTAACACTACTTCAGGAGGAACTGGTGGTCTTATATACATAGATCCCTCCACACTTAGGAGAACCACTACTGTCACTACAACATCAGCTCCTAGTCACGACAGTGCTGTCACCATGACAACAACAGCCAGTCAGTTGGCTCGGGGGTTTGGTATCATTATACGTCAGATAGCAGATCTATTGACGATGTTACAGGACTACCACGCCCTGGCTCCAGGACTGCCACGTACATTAGATATAACAGATCAAGAAGCCATTGATCTACAATTTTTCTCTGAATGGAACCTACGACATACATGGGAGTGGCTGTTTGATGTCATGGACTCTACAGAGGCTCAGTTAAGGTTTGGTTCAGCTCTAAGTAATACTTCTGACCACTCTAATCCTGGCCATCCTCTACACTCTAATTACATCAGGACACAGAGAGAGAGAACCAGTCAAGAGGAACATCCTCCTATTTCACAAGTTCTAGAAAGGAGGAGGGCAAGATTTGGGACTATAGCACCCTCTGATGGAAGTGTAGCCAGGAGAGACTTCCTTAATTATGCTCTATCGCTGATGAGATCCCACAATGACGAGCACTCTGATTCCCTCCCTAGTCTTGACATCTCTGCCATGCGACATGTGGCCTATGTCTTTGATGCTCTCATCTACTATATGAGAAGTGGAACAGATTCCGATACTGACGTGATACGGGATGGAATATCGGTGATATCATGTGACCATGACGAGAACGAAAATGAAGAACATGACGATGAAATAACCGGCAATAGTTTATCAGGAGTTGAAAATGAGAGTATTGACGGGGAAAGTGATATGACGGGAAAAACAGGAAGGAAGCATCCATTTTTCCACCGATCAGAATCAACGATATTTTTAGGTTGTCCACCTCCCGATCCTTTTAAGACACCATTAGTAGAAGCTCTGCGATTGGCTGATCAGCCACACCTACTTCATCCAAATGCAAGGCGTGAGGATTTATTTGGAATGGCACGACAAACGGTTATGGCTGTTGCTTCTTGTGAAACCAAAGTTCAGCCTGTGTTCAGTGAACCGTGGAATCTGTCAGACAAGGTGCCAGTACGTATGGCTCTGACAGCGAGACTGTCAGATGTCCCTGTCCCAGGAGTACCACCGACAGGCCCTGTAATACCAAGTTCTAGTGGACCGTCAGCTCCACCTAGTAGTAGCACTGTACCAGACATTTCATACAATACGGGTAACGCTAGTGTAATTGTCAAACCTTTGTCTCAGATGTCTTCATCCAGTTCCTTGTTCAATCCACATCTTCAGGGACCATCTCTAAATAAATCAGAGGGAATATTTCAAAATAAATTCTCTAACGATGAGCCAATGAATTTGTCGTCGCATGATTCTAGCTTGTCGAGTGATTTAGCTCAAGCAGACACTCAGTCTCTAGAACAAAAGACGGAAGTTCAACAAGCCAGCGTCATCGTCCATGCCAGTTCAGCACAAGCCTCTTCTTCATTATCAAGGCCTTCTTCAACTTCCTCCTCCCCGTTCAAACCTGTAGTGACCTCTCACGATAGTAAAAGTGTCTCCGATGTGTCAAGTCGGCCATCAGTAGAGAAGTCTGATGTTGAATCTAAAGGTCATAGTTCACAGAGTGTAAGGTCAGATGAGACCCCCTGCAGTATGGATACCATGGTATCAGGAAGTGTATTATCTACTGAAGCCAGTATCAGTCACCCTAGTAGTAGTGTCCCCAGTGGTAGTCTTGGTGCAAGTGTCCCAAGTACCAGTACAGAGGGACCAGTTGATATGGTTGGAGCCAATGAAAATGTTGCAAATACAGTTGTCATAGAAACCTCTCAAACATCAGCTACCTCACAGTTCCCATTTGCATCAGCCAGGCAGAATCCCATTGGCCACCAGTTATCACATGATGTATTGTTGGGGAGATGGCGTTTGGCATTAGACCTGTTTGGTCGTGTTTTCTGTGATGATGTGGGAGCTGAGCCAGGATCAGTTATCAGTGAGTTAGGTGGATTCCCTGTCAAAGAGAGTAAATTCCGACGAGAAATGGAGAAGATACGAAACTCACAACAAAGGGACTTAACTCTTGAGGTTGAAAGAGATCGTAACCAGTTGATTATTCAGTCTTTCAAACAATTAAACAACCAGTTCAACCGGAGAACAAACACCAGTGGTCAGCCATTGGCTGTACACAGGGCAAAGGTCACCTTCAAAGATGAACCAGGTGAAGGGAGTGGTGTTGCCAGGAGTTTTTATACTGCTATTGCAAATGTA

Transcript

Bpl_scaf_41575-0.18

Protein

Bpl_scaf_41575-0.18

CSFQCQVVLQGKSRNLIIRELQRTNLDVNLAVNNLLSRDDEGDDNDDDSQESYMPDDLMSLLDSGMHSDHPSVIIDADAMYNEDVFGYYSTLRSRGSGTRSRLGDRDMEIDRSRERESIFRIRERRRLDTTLREEAMKALDRGKNDGLDADGLKKQKQPTDSPLNFGEELQFFIEKDGTSCRFSHIAAMHSELVCVGTNGNLYSWKWNEPEPYRHPDNPNIRHPKVVSLGLQHEKIIGLSACNVRASVFTETHRMATWVDDTLNKVASKLEHAVQTFPEFLTDKIVSLHTCSLYTCARLESGALYWWGVMPFGQRKKMVERTKTKKKKSKDTTSFTSFGTSDVVMGSLVCLRSSPMYHIGALAFTSVDGVPKVGQLMESAWSLNDTCRFKIIKNTVSEIKPEPKPEAKLPESKPDMPPPPSPDSSTCSDHSGPSLVRPASLKRKKAPTPIKEFEKKDEENWPLKNVVFVEDVKTVPVGKVIKVDGAYAAVKFQSKDESSSKEDLTSLLQDCRLLRKDDLQVVKSVNAPRLPDCFQKTPKKVTLSENGQILAVAVDSEGIHVIARSGSKLSYIVYNLTTGKLDQDAPFPTDTQAFMGSLRSDITLHNTGDELLVQLQDGNGAIYPLAKDCNDGIRDPMWLNLPPIRCLGMRVQSLGNTLLNQKNKAAVIVLAVEHQTLIQHILRCDLDKVKTILSSLEQEPSTPASQKQLQDILRQHCDGNRNIIHTCIAMCVPTSNKDYDADPPSLPTTTTSSSSPFTSALEAINAVSSAVDALAAIQSRSSHSEPRSVANRNEMIRDMMRITSAARPRSSTGSRGGAVDVSDSDRESDPGICVPTLSWPPDPPTYAESLYMDTGLPHPASNMGPLGPTEYSTVSLPPVKMDEKERRNKANQILKLLCESPVLQPHLHTLLSARNAEGLTPFMQSVRGCAYQAALLLLDTCKKLGSKDDLDKAAFMCMIYPPGSTLDSSPLQMLCCNDTCSFTWTGREHIKQDIFECKTCGLTGSLCCCTECARVCHKGHDCKMKRTSPTAYCDCWEKCKCKSLIAGQQGPRFDLLSRVLTDTDLVTLPNSRGENILLFLVQTVGRQLVEQRQYRPARTRAPGTRNKTLAQELDIEMPEHDLEPPKFSRRALERILNDWTAVKAMIHSGKKQNTSSPDVVYEDQLYLDSQSGTAHLDKFTHNLLVKCSVEMLETLLTTLIREMQNDNVEGRKAEAKTVARRFVRSVARIFVVISIEMSPDANRKKSSTSKSCEALVRCKKAFQALINIAIEELCEIGNSLIAPVRMGVTRPTAPFSLVSGNIEAVQGSEEIFNVDPLPAKSSSTDTGTSSSYISHTGVLPSHRQSNRDPVERDDDEIMPADVEEVEVVDGLERDDDHSDRDDHDDHQSEHSDQDQGQGDHEEGAAESDMDLDLLAESESDSESSHSNQDNVSVQRSAVTAATAGSDAGTGPLSLAHFSEDSGDSPDSSNQEDDYESDENQSEANDADDMNFIDEQLERCNTSGTHGQRTLQAPQTMQWAIRQRDTTSSRPQPSAASNTTSGGTGGLIYIDPSTLRRTTTVTTTSAPSHDSAVTMTTTASQLARGFGIIIRQIADLLTMLQDYHALAPGLPRTLDITDQEAIDLQFFSEWNLRHTWEWLFDVMDSTEAQLRFGSALSNTSDHSNPGHPLHSNYIRTQRERTSQEEHPPISQVLERRRARFGTIAPSDGSVARRDFLNYALSLMRSHNDEHSDSLPSLDISAMRHVAYVFDALIYYMRSGTDSDTDVIRDGISVISCDHDENENEEHDDEITGNSLSGVENESIDGESDMTGKTGRKHPFFHRSESTIFLGCPPPDPFKTPLVEALRLADQPHLLHPNARREDLFGMARQTVMAVASCETKVQPVFSEPWNLSDKVPVRMALTARLSDVPVPGVPPTGPVIPSSSGPSAPPSSSTVPDISYNTGNASVIVKPLSQMSSSSSLFNPHLQGPSLNKSEGIFQNKFSNDEPMNLSSHDSSLSSDLAQADTQSLEQKTEVQQASVIVHASSAQASSSLSRPSSTSSSPFKPVVTSHDSKSVSDVSSRPSVEKSDVESKGHSSQSVRSDETPCSMDTMVSGSVLSTEASISHPSSSVPSGSLGASVPSTSTEGPVDMVGANENVANTVVIETSQTSATSQFPFASARQNPIGHQLSHDVLLGRWRLALDLFGRVFCDDVGAEPGSVISELGGFPVKESKFRREMEKIRNSQQRDLTLEVERDRNQLIIQSFKQLNNQFNRRTNTSGQPLAVHRAKVTFKDEPGEGSGVARSFYTAIANV

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|UBR-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11547	E3_UbLigase_EDD	E3 ubiquitin ligase EDD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126	Domain	Zinc finger, UBR-type	Interproscan
IPR009091	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR024725	Domain	E3 ubiquitin-protein ligase UBR5, ubiquitin-associated domain	Interproscan
IPR047503	Domain	E3 ubiquitin-protein ligase UBR5, UBR-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46276	E3 UBIQUITIN-PROTEIN LIGASE UBR5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0034450	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0090263	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10593	EDD1, UBR5; E3 ubiquitin-protein ligase EDD1	EC:2.3.2.26	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41575-0.18 global RNA-seq network