Gene detail

Detailed information of Bpl_scaf_41537-0.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41537-0.9	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Bpl_scaf_41537	89327	123342	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_41537-0.9

Transcript

Bpl_scaf_41537-0.9

AAATACCAAGATTCCATTGCACCTATCCATAACCTTGTAGACAATGTAAACGATGAAGCTAATGAACTACAAAATATTAATGTTGTTTTGTCACACACAAATGTCCATAGGTTAGAGGACTATAATACACGATGGAAAGAATTACAGATCTCTTTAGAAGATAGGTTAAAGAATTTACAAGAAGCTAATAGGGAATATGGACCAGATTCTCAACACTTCTTGTCCAGATCAGTGGATCACCCGTGGGAACGATCTGTGTCTGGAAATAAAGTGCCTTATTATATAAATCATACAACAGAAACTACCCACTGGGACCACCCAGAAATGGCAGCAATCATGGAGGCCTTAAATGAATTAAATGATGTTCGATTCTCAGCGTATAGAACTGCCATGAAAATAAGAATGTTACAGAAGAAACTCAGATTGGATTTAATGGCGATGAACGTAGCCACACAATCATTTGAGGAGCATCAACTTCGTGGACAAAATGACAATTTAATGGACATTATACAAATAATAAATTGTTTATCAACGATGTATGAAATAGTCGCTCAAAGTCATCAGGAACTAGTCAACGTCCCATTGTGTGTGGATCTTGTTCTTAATTGGATACTCAATATTTATGATGTAGCAAGAAGTGGAAAAATAAGAGTTTTATCTTTTAAAGTAGGATTAATATTACTATGTAATGGACATCTAGATGAAAAATATAAATTTTTGTTTCGGTTGATAGCCAATACTAATGGTTACGCAGACCAGAGGAAGTTAGGACTTTTACTTCACGATTGTTTACAAATACCACGGCAACTGGGGGAAGTGGCTTCCTTTGGTGGTAGTAATATTGAACCTAGTGTTCGAAGTTGTTTTGAAAAGGCTAATGGTCGACCAGAAATCCAAGTTTCTCATTTTATGGAGTGGTTAAGATTAGAGCCTCAGTCTTTAGTGTGGCTTCCTGTGTTACATAGACTTGCTGCTGCTGAAACAGCAAAGCATCAAGCCAAATGTAATATTTGTAAAGAGTTTCCCATAGTGGGATTTAGATATCGTTGTTTACGGTGCTTTAATTTTGATATTTGCCAAAATTGTTTTTTCTCCGGAAGGAAATCCAAAAATCATAAACTCACTCATCCTATGCAAGAATACTGTACCGCTACAACCTCAGGAGAAGATGTACGAGATTTTACAAAAGTCATCAAAAATAAATTTAAAACAAAGCGTCATTTTAAGAAACATCCCAGGCTTGGTTTTCTTCCTGTACAGACAGTTTTAGAAGGAGATGCCTTAGAAAGTCCTTCACCATCACCGCAACATAGTACTTCATCACAAGATATGCATTCCCGTCTAGAACTATATGCAAGTCGTCCCATGCAGATTATGATGGTAGTTGATTCTGATCAAAAATCAGAATTAGAAGCCATGATAAAAGATCTTGAAGATGAAAATAGGTCACTGCAGAAAGAATATGACAGATTAAAACAAGCAAAAGAAAATCATGTGAACGGACACTCAGGCTATAGTAGTGATAATGATGATGCCGATTCGTCAGTTAATCGTGATGCTGAGATGATCGCTGAGGCTAAGTTACTACGCCAACACAAGAGTCGATTAGAATCAAGAATGAAAATACTAGAGGACCACAACAAACAGTTGGAAGCTCAGTTGCTACGGTTACGACAACTTTTAGAACAGCCAGCTGTAGAACAAAGTATGTCTGTGGGATCATCAATGCCTACCACACCTTCATCACAGAGCTCTACCCAGGGGCAGACCAACTTTAGATTCTCACCACAGCTGGAATCAACACCACAAATGAATGGTCATAGTTCAGATTACAGAGATGATGCAACAGATCTAAGTGAAATAGTACCAAACAGCAGCTACAGTACTCCTAAAGGTAAAAGTAATAATGTAGGGAACCTGTTCCAATCAGCAGGTGAGATTGGCAAGGAACTGGAAACATTGGTGACAGTGATGACAGATGACAGTAATGGAGAGGATGTTAAATACTAAAAGTACATGTGACCTCACATTGAAACAATCTTTCCCACCTACCTACCACAAGGGAGGTAATCCCAGCCCCGTTGATATAGACGGGAGTGTAAGAGGATGACATGACAGATTGTCCAGATGGTTTCTGGATAAAATAGGACAGCCATAAAGAGATAGGGAGAACTATATTAAGATTTAATTTGCAAGAAAATTGTTTTTATAAAGCAGATAAAGGTTGCTAATGTTATAAAATATTTCTACATACTTCAATTAAATAACTAAAAACCTCACATCACATTTAATGCATTTTTATGTTGGATTTTATTTTTTCCTGTTTATTATTGTTTATTTGTTTAGTATTGTATTTTTTTAAGTTGCCATAAGACAGGAGTTCAGATAGTCTGTTGTGACAGGGAGAATACATTGTTTGTTATGACAGGGAGAATACACTGTTTGTTATGACTGAGAGAATAGGTTGTATGTTAGGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAATTAGTGTATTTTGTTCTTGAATGATATATAAATGAAGATATTAATTAGTATTCAAGCCATATTTTGTACACGGAAATAATTTGTTGATAAATGTTTTGAACATTGGTAATGTTTGTTAACTATAATAAACATTTGTGACTACAAAATGTATTACTAAAATGTTTACTACCTCAAATTCACAATGGTAGATTCTAAAATTTAGTTTATCTAGAAAACATTTAGTGAACCGATTAGCTTAAAAATTAGTTTAGGAAACTGAAGTTGTTAGAAAAATATGACATGCCAAAATAACCAGTGCTGTTGATCATGTGATTAAAATAAAGTATTTGAGGACAATATTTGAATACATTTTGATATAAATGATAAGTATTTAAGTAAAATTAATGAGATCTGCTATAATTATATCAAAGAAAATGGCTAATACATGGAATAAATATATTTACTATATTCAAAATGGCTAATATTTCTTTGATTTGTTATTATAGGGCAAGATATGTTTATGTTTTTCACATTCTTCAGTTTTGTTTCGAGTAATGGAGATATAAAAAAACGTAGGTTTAAATTTGTAAAGATTGATGGAGAACACTTATAAATTTGTAAAGATTGATAAAGTGATAATGACAGAGAACACGTTGACATTAATTTAATTTTTAATTTAACTTCATATCATTCCCAGATTCATAATTTCTACTGTAATTCATGTCTAGCCTCATTTTGATGCAGCAAAGGGTATATATAATTAATTATATAGCTGCATGTATCTATTTATAGAGAGTAAATAACACAAGCAAATAATATGGGAAATCTCTAAAGAAGGAAAACAGATTTGTACCAAATATTGTCAATAGAAAATTCTAATTTTATTGTGTTCAACTATTTATTATCTCCATTTTTTCAATGTGCATAAAAAGTAGCAGATGACATTTTTCATATGTGATGTGTCATCTTGTGTATAATTTGTTTAATGGTGCTATTAGTTAACTTTTGTTTGTTTCGTTCTACAGTAGTGTGCCAAAAGTGAGTCAAGTTCTCAAAATTACCCTATATATTCAAATAAAAACACTTTCTTAAATATTTTCTTTTCTTAAGACAATTAAAAACAGAATATCGTACCATTTCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF09068	EF-hand_2	EF hand	Domain	Interproscan
PF09069	EF-hand_3	EF-hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433	Domain	Zinc finger, ZZ-type	Interproscan
IPR001202	Domain	WW domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015153	Domain	EF-hand domain, type 1	Interproscan
IPR015154	Domain	EF-hand domain, type 2	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR043145	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR050774	Family	KCMF1 and Dystrophin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0099536	Biological Process	synaptic signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10366	DMD; dystrophin	-	Hypertrophic cardiomyopathy (HCM)	ko05410	PMID: 28812709
			Arrhythmogenic right ventricular cardiomyopathy (ARVC)	ko05412	PMID: 28812709
			Dilated cardiomyopathy (DCM)	ko05414	PMID: 28812709
			Viral myocarditis	ko05416	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41537-0.9 global RNA-seq network