Gene detail

Detailed information of Bpl_scaf_41492-0.26 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41492-0.26	POLY A POLYMERASE CID PAP -RELATED	Bpl_scaf_41492	437	27671	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_41492-0.26

GATGCTGCACTACACTTATTTGGGTCATCACACAATGGATTTGGATTCAGAAATAGTGACCTTGATCTCTGTGTGACATTTGATGAACACCCAACAGGGGAGAATCTTGACCTTGTCCACTGTATTGAGAATATATGCTCTAAACTAAAGACCCACAGAGGACTTTACAATGTATTCTCAATAACTACAGCTAAAGTACCGATTGTAAAGTTTAGACATCGTAGATCTCAGTTAGAAGGAGATATCAGTATGTATAATTTATTGGCTTTACAAAATACAGAAATGGTACAAATGTATTGTGCAATGGACCCACGAGTCAGAATTTTAGGATATGCTTTGAAGGTTTTTGTCAAAGTGTGTAACATTGGTGATGCATCAAGAGGAAGTCTGTCATCTTATGCCTATGTTCTGATGTTGTTACACTATCTACAGCAGTGTAAACCACCAGTCATACCAGTGTTACAAGAGTTGTATCACCATTATGGGCCAGAAAAACCAGAGTTAAAGATTGATGGATGGAATGCCTGGTATTTTGACAACATGAAGGCACTGCCTGATGTCTGGTTAGATTATGGTAAAAACAAGCAGACAGTTGATGAACTATGGCTAGGACTGTTTAGATATTATACTGAAGAGTTCAATATGAAGGAACAAGTTGTTTGTAGTAGACAGACACAAGTACTTACCAAATTTGAAAAGTTATGGAATAGTCCCTGCATTGCTATAGAAGATCCTTTCGACTTGAACCATAATCTTGGAGGTGGTCTCTCTAGAAAAATGCATCAGTATATTCATAAAGCCTTTATAAAAGGTAGAGAATTATACGGCAATCCAAGACCAGACTTACAGATGGACTGGAAAGTGTTACATGATTATTATTTTGATACAGAACGTTTAATGGAGGGTCCACCTCCAAATGATCGCTGTTGTAGAGTGTGCAATAAAATTGGTCATATTGCCAAGGAATGTCCTGTTGTGAAAAATAGGAAAGAAAGGGAGGAAAAGGATAGAAAGAGGAAGGCAGACCAAAAGACAAGAGAGGATGAAAAGAAGAAACATCAACATCAGGCAAATCAAAGAGATAATGAAAACTATGGTAATGAGAGGAGTGGGAGTGGTAATTACAGCAGTGATCGGGGAAGAAATTGTGGAAATTATAGTAATGAAAGGGGTGGCAATACAGGCATGTCAAGAGACCAAGGCAATTATAAGGAAAGAGTTATTCATAGGACGATATCTGAATCACACGACCATCAGTATTATCAGAGTCGGCCAATGCCAGTTCCCGAGTCACGATCTCAATCTCATCGTTCCATGTCATTACCTTCAGGTCATCAGGGTCATGGTCATTATAGTCCTATGTCATCACCACAGGGTTATCATGGATTTCAACAGAACATGAGTCCATTACAGCATAATATATTGTCACAACAATACAGACCATCAACCTATTCTGACAACTCGGGAGTCAATCGCTCATTATTTAATAGCCAAGCACAACAGTTTAGATCATCACCAGGAAGGTCAACCTCAAGTGGAGGTCACCAGGTACCAGTATATGCATGCCATCAGCCATATTATATTTTAGCACCACCTCAACAACAACTATCTGGTGGCATAGCCGAAGGATATTTGTTGCCTAGTTGTACTTATAATCCTCTATATCCTAACATGTCTATCCCGGTTGGATTGGGAACAACTAACATGCCCATTACGTCACCACCATCCTCTGATTTGGTGACGGGTGATCAGTTTTGCATGGCAGCTGAATCAGTTGGTACTGACCGTGAGGTTAGTGATACTGGTTCATTCACGCCTCTAGTATTCTTTACTAGAGGCAGCAAAGACCTAATAACAGTAACAGTCAACAGAACAGGGGGAATAACTCTTACACAGAGAGTCCTCAAAGAAATGGTCAAAACCCAAGAATGCAGCACTCTATGTTTAGACAAGCTGAACAGTATTATAACCAAGGACAAAAACACTGACACAAGGTCATCAGTTGACCTATAA

Transcript

Bpl_scaf_41492-0.26

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01909	NTP_transf_2	Nucleotidyltransferase domain	Domain	Interproscan
PF03828	PAP_assoc	Cid1 family poly A polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR002058	Domain	PAP/25A-associated	Interproscan
IPR002934	Domain	Polymerase, nucleotidyl transferase domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:0050265	Molecular Function	RNA uridylyltransferase activity	Interproscan
GO:0071076	Biological Process	RNA 3' uridylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13291	TUT; terminal uridylyltransferase	EC:2.7.7.52	Non-coding RNAs	ko03100	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41492-0.26 global RNA-seq network